Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013914.1 Corchorus capsularis cultivar CVL-1 contig13935, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53653

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7--40
2
17.0
2
100
0
68
50
0
0
50
1.00
1392--1422
1
31.0
1
100
0
62
100
0
0
0
0.00
2737--2773
3
13.3
3
83
16
53
35
0
0
64
0.94
6329--6368
2
19.5
2
94
5
71
47
2
0
50
1.14
7250--7324
36
2.1
36
85
5
98
48
8
0
44
1.32
7721--7809
45
2.0
45
97
0
169
24
22
20
32
1.98
8313--8382
23
3.1
23
71
8
81
40
12
12
34
1.82
8312--8419
44
2.5
41
78
12
108
41
12
15
30
1.84
8376--8746
167
2.2
166
84
4
471
39
15
15
28
1.88
8812--8851
21
2.0
20
90
5
62
52
0
7
40
1.30
8867--8906
2
19.5
2
89
5
62
45
0
2
52
1.14
9738--10044
127
2.4
127
97
0
569
33
11
7
47
1.68
13197--13265
28
2.6
27
90
4
104
34
11
2
50
1.54
13326--13414
37
2.4
37
79
3
99
17
19
10
52
1.72
13501--13582
33
2.5
33
97
0
155
15
42
31
9
1.80
13656--13774
32
3.7
33
86
5
154
11
33
36
17
1.86
16251--16288
11
3.5
11
85
10
51
57
2
0
39
1.12
31580--31608
2
14.5
2
100
0
58
51
0
0
48
1.00
45375--45419
6
7.5
6
100
0
90
33
0
15
51
1.44
50511--50871
162
2.2
165
83
9
427
32
14
16
37
1.89
53622--53653
2
16.0
2
100
0
64
50
0
0
50
1.00

Tables:   1

The End!