Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013917.1 Corchorus capsularis cultivar CVL-1 contig13938, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9788
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33


Found at i:3907 original size:64 final size:64

Alignment explanation


    Indices: 3806--3998  Score: 377
    Period size: 64  Copynumber: 3.0  Consensus size: 64

       3796 GTAACTCTGC

                          *                                                 
       3806 ATCCCACTCAAAAGGGCTATAGTTCTCATTAAGAGTATTAAAATACTCAACCTTCATTACTGTT
          1 ATCCCACTCAAAAGAGCTATAGTTCTCATTAAGAGTATTAAAATACTCAACCTTCATTACTGTT

                                                                            
       3870 ATCCCACTCAAAAGAGCTATAGTTCTCATTAAGAGTATTAAAATACTCAACCTTCATTACTGTT
          1 ATCCCACTCAAAAGAGCTATAGTTCTCATTAAGAGTATTAAAATACTCAACCTTCATTACTGTT

                                                                            
       3934 ATCCCACTCAAAAGAGCTATAGTTCTCATTAAGAGTATTAAAATACTCAACCTTCATTACTGTT
          1 ATCCCACTCAAAAGAGCTATAGTTCTCATTAAGAGTATTAAAATACTCAACCTTCATTACTGTT

             
       3998 A
          1 A

       3999 CATGATCCAT


Statistics
Matches: 128,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  64  128  1.00

ACGTcount: A:0.36, C:0.22, G:0.10, T:0.33


Consensus pattern (64 bp):   
ATCCCACTCAAAAGAGCTATAGTTCTCATTAAGAGTATTAAAATACTCAACCTTCATTACTGTT
Done.