genome.fa.s13923.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013923.1 Corchorus capsularis cultivar CVL-1 contig13944, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61490

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--50	22	2.2	24	82	7	59	4	14	0	82	0.82
1--50	25	2.0	24	84	3	64	4	14	0	82	0.82
480--562	9	8.6	9	76	16	69	3	18	0	78	0.90
480--562	14	6.0	14	70	16	66	3	18	0	78	0.90
483--560	7	11.8	6	75	15	50	3	17	0	78	0.90
6225--6282	21	2.7	21	76	12	55	48	25	10	15	1.77
10260--10315	17	3.2	17	80	14	69	25	17	0	57	1.41
10326--10389	27	2.2	29	83	13	96	14	21	0	64	1.29
10451--10995	21	26.9	20	67	21	187	21	20	5	52	1.67
10510--10588	35	2.2	37	88	6	126	22	20	3	53	1.62
10512--10606	15	6.1	15	68	18	59	23	17	4	54	1.60
10546--10623	22	3.5	22	81	6	104	23	20	3	52	1.63
10461--10703	99	2.5	98	84	4	310	23	20	4	52	1.63
10540--10624	44	1.9	44	92	0	143	22	22	3	51	1.63
10747--11044	22	14.2	21	68	23	96	20	19	6	53	1.68
10812--10845	14	2.3	15	85	5	52	23	14	8	52	1.69
10783--10902	44	3.1	37	75	19	120	20	17	7	55	1.66
10783--10858	35	2.1	36	88	9	111	21	17	7	53	1.68
10744--10902	79	2.0	80	84	10	211	20	17	7	54	1.67
10819--11032	44	4.9	43	77	11	172	20	19	7	53	1.67
10824--10992	43	4.0	43	78	7	132	19	18	7	53	1.68
10941--11230	36	8.3	36	76	13	220	19	23	3	54	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10968--11032	15	4.4	15	74	18	64	21	18	4	55	1.60
10976--11039	29	2.2	28	83	10	76	20	20	4	54	1.62
11062--11216	7	21.7	7	70	13	102	17	24	2	55	1.54
11062--11216	29	5.4	29	74	13	99	17	24	2	55	1.54
10998--11233	36	6.6	36	85	6	279	18	24	3	53	1.59
11221--11271	26	2.0	26	88	7	77	29	15	3	50	1.62
11225--11279	26	2.1	27	86	3	76	27	16	3	52	1.60
15106--15177	25	2.9	25	91	0	108	37	25	16	20	1.93
15691--15748	30	1.9	30	96	0	107	25	25	24	24	2.00
17123--17155	2	16.5	2	93	0	57	48	3	0	48	1.17
19500--19554	26	2.2	26	83	3	67	60	5	1	32	1.30
27103--27129	6	4.5	6	100	0	54	55	14	0	29	1.40
28068--28092	10	2.5	10	100	0	50	24	8	20	48	1.76
35046--35078	6	5.5	6	92	0	57	51	18	0	30	1.46
35075--35108	12	2.7	13	90	4	52	58	8	11	20	1.59
36009--36033	10	2.5	10	100	0	50	24	8	20	48	1.76
37313--37339	2	13.5	2	100	0	54	48	0	0	51	1.00
40597--40729	39	3.3	39	85	5	169	29	15	15	40	1.87
40597--40746	39	3.8	39	82	7	135	30	14	15	40	1.86
49903--50000	49	2.0	50	93	2	171	57	11	23	8	1.60
51147--51472	62	5.3	62	92	1	505	37	13	21	27	1.91
51273--51444	36	5.3	36	65	30	136	37	12	20	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54902--54954	24	2.2	24	86	3	72	43	3	18	33	1.68
54998--55152	22	7.2	22	76	11	135	45	5	19	29	1.72
55033--55201	8	22.1	8	65	22	53	44	4	21	28	1.71
55046--55132	30	3.0	29	71	18	72	48	3	18	29	1.64
55139--55189	22	2.2	24	79	6	61	39	3	23	33	1.73
55217--55348	53	2.5	53	85	7	160	50	2	21	25	1.61
55271--55306	16	2.2	16	90	0	54	50	0	16	33	1.46
57174--57210	14	2.7	14	95	4	67	43	5	10	40	1.63
57109--57222	48	2.3	50	91	5	180	37	15	10	35	1.82

Tables:   1

The End!