Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013926.1 Corchorus capsularis cultivar CVL-1 contig13947, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75262

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2430--2477
24
2.0
25
83
4
62
16
6
6
70
1.28
6218--6256
21
1.9
19
85
10
51
43
20
10
25
1.83
7776--7816
15
2.7
15
88
0
64
7
29
19
43
1.78
8896--8956
26
2.3
26
83
5
70
14
8
6
70
1.32
11225--11302
29
2.7
29
76
9
95
41
28
14
16
1.87
11663--11718
22
2.8
19
84
15
62
8
5
3
82
0.94
11707--11768
26
2.3
25
83
10
70
11
8
9
70
1.33
11783--11821
15
2.5
15
84
15
53
48
2
0
48
1.15
13630--14026
220
1.8
220
97
0
758
35
19
15
29
1.92
14258--14292
18
2.1
16
89
10
52
62
11
5
20
1.48
23796--23836
21
2.0
21
85
0
55
14
24
17
43
1.86
29325--29351
13
2.1
13
100
0
54
37
0
25
37
1.57
30913--31174
123
2.1
123
88
1
382
15
25
30
28
1.96
37547--37585
19
2.1
19
90
4
62
33
20
2
43
1.65
37538--37599
11
5.9
11
81
12
60
37
17
3
41
1.66
37538--37598
22
2.9
22
76
18
67
36
18
3
42
1.66
41287--41320
11
3.2
10
84
15
50
50
17
2
29
1.61
48107--48140
11
3.2
10
84
15
50
50
17
2
29
1.61
49775--49800
11
2.4
11
100
0
52
0
7
0
92
0.39
52585--52623
19
2.0
19
85
14
53
61
5
15
17
1.51
53396--53439
21
2.1
21
91
0
70
20
6
25
47
1.74
61319--61359
16
2.7
16
92
7
68
0
34
7
58
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61659--61704
22
2.1
22
100
0
92
30
13
17
39
1.87
68096--68126
12
2.6
12
89
0
53
12
3
16
67
1.35
68931--69147
106
2.0
106
97
1
409
56
7
11
24
1.60
69755--69782
3
9.3
3
100
0
56
67
0
32
0
0.91
69781--69806
11
2.4
11
100
0
52
92
7
0
0
0.39
70054--70090
18
2.0
19
89
5
58
43
2
8
45
1.47
70782--70811
13
2.4
13
94
5
53
13
0
0
86
0.57
71622--71663
11
3.8
11
87
12
68
45
4
2
47
1.36
71622--71668
22
2.1
22
100
0
94
44
4
4
46
1.42

Tables:   1

The End!