genome.fa.s13931.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013931.1 Corchorus capsularis cultivar CVL-1 contig13952, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54536

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2536--2564	1	29.0	1	100	0	58	0	0	0	100	0.00
3002--3033	3	10.7	3	100	0	64	0	0	34	65	0.93
5993--6366	126	3.0	126	95	0	658	37	15	24	22	1.93
9746--9785	3	13.3	3	100	0	80	32	0	0	67	0.91
11850--11938	33	2.8	33	88	6	121	44	4	0	50	1.22
11850--11948	11	9.2	11	76	7	96	44	4	0	51	1.20
12434--12464	12	2.6	12	100	0	62	35	38	16	9	1.81
12511--12553	16	2.7	16	77	0	50	51	37	6	4	1.50
16170--16242	33	2.2	33	92	2	121	20	28	2	47	1.64
16273--16371	33	3.0	33	93	0	171	31	18	21	29	1.97
17248--17286	6	6.5	6	90	0	60	15	17	48	17	1.81
17311--17392	42	2.0	42	90	0	128	28	13	24	34	1.93
22967--23005	12	3.6	12	80	19	50	25	28	15	30	1.96
24562--24597	12	2.8	13	87	4	56	25	22	13	38	1.91
24562--24609	25	2.0	25	84	8	64	27	22	12	37	1.90
24911--24937	2	13.5	2	100	0	54	48	0	0	51	1.00
25059--25658	22	27.6	22	67	13	178	35	14	10	39	1.80
25372--25429	23	2.5	23	91	5	91	41	12	5	41	1.64
25608--25658	19	2.6	20	84	6	68	25	15	13	45	1.83
25753--25968	22	9.8	22	70	12	131	34	14	9	41	1.79
25753--25919	66	2.5	66	77	8	171	35	12	8	42	1.74
26005--26060	22	2.6	21	80	8	60	37	17	5	39	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26170--26218	22	2.2	22	85	0	62	42	24	6	26	1.78
26247--26308	22	2.9	22	80	2	81	40	12	8	38	1.73
26474--26511	19	2.0	20	85	15	53	63	2	5	28	1.30
26831--26896	31	2.1	31	86	10	91	48	4	18	28	1.67
33026--33085	31	1.9	31	86	6	86	31	18	3	46	1.65
33391--33428	19	2.0	20	85	15	53	31	5	2	60	1.33
33639--33721	42	2.0	42	92	0	139	34	14	15	34	1.88
33592--33721	64	2.0	66	82	5	158	34	10	16	37	1.84
33594--33775	22	8.3	22	79	8	138	32	9	18	38	1.84
33626--33775	42	3.4	43	78	12	126	32	11	19	36	1.87
33885--34051	22	7.6	22	67	13	76	42	10	16	30	1.82
34059--34184	22	5.6	23	81	7	107	39	8	13	38	1.76
34059--34184	45	2.8	45	82	5	132	39	8	13	38	1.76
34127--34195	22	3.1	22	89	0	93	36	10	14	39	1.80
34226--34274	22	2.2	23	78	10	57	36	14	12	36	1.83
34236--34288	22	2.4	22	87	3	70	32	11	16	39	1.85
38108--38142	18	2.1	16	89	10	52	37	5	0	57	1.23
39428--39459	14	2.3	14	100	0	64	53	15	15	15	1.74
46208--46245	2	19.0	2	89	10	60	50	2	0	47	1.15
47210--47307	42	2.3	42	91	1	151	33	5	18	42	1.72
53320--53359	6	6.8	6	82	5	55	37	10	0	52	1.35
53313--53361	12	3.9	12	89	5	71	38	10	0	51	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53454--53749	109	2.7	109	91	3	457	37	11	1	50	1.48
54503--54536	2	17.0	2	93	0	59	47	2	0	50	1.16

Tables:   1

The End!