genome.fa.s13933.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013933.1 Corchorus capsularis cultivar CVL-1 contig13954, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52428

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1826--1915	45	2.0	45	97	0	171	25	24	18	31	1.98
5994--6034	19	2.2	19	100	0	82	39	24	9	26	1.86
7942--7981	6	6.7	6	100	0	80	85	0	15	0	0.61
17727--17763	17	2.1	18	90	5	58	54	32	5	8	1.53
24087--24414	49	6.7	48	87	6	394	23	31	16	28	1.96
24091--24414	146	2.2	146	85	5	422	23	31	16	28	1.96
25506--25530	13	1.9	13	100	0	50	40	12	8	40	1.72
26403--26468	30	2.2	30	86	5	89	22	37	30	9	1.85
40034--40073	18	2.2	18	86	4	53	45	5	20	30	1.72
43179--43354	58	3.1	58	92	1	300	41	17	23	17	1.90
48627--48673	13	3.5	13	72	16	51	12	25	0	61	1.31
48624--48701	27	2.8	28	84	9	81	15	23	0	61	1.33
48746--49004	21	12.7	21	71	17	172	20	19	6	53	1.67
48797--48953	36	4.1	36	80	12	172	20	18	6	54	1.65
48839--48943	44	2.4	44	84	6	115	20	18	4	56	1.60
48865--49004	44	3.3	43	81	7	151	21	18	5	54	1.64
49074--49170	35	2.8	35	85	6	133	18	25	4	51	1.64
49282--49395	40	3.0	38	74	16	112	22	15	9	51	1.72
49328--49457	34	3.8	35	70	18	112	26	16	6	50	1.68
49226--49458	74	3.2	69	76	11	200	25	17	6	49	1.71
49418--49631	54	4.0	54	95	0	376	26	19	7	47	1.75
49418--49868	108	4.0	108	78	12	510	26	19	6	47	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49579--49710	71	1.9	70	96	1	246	28	21	4	45	1.71
49520--49873	110	3.0	119	78	13	410	26	20	5	47	1.73
49646--49873	55	4.1	55	87	3	323	25	20	5	48	1.71

Tables:   1

The End!