Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013937.1 Corchorus capsularis cultivar CVL-1 contig13958, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32720

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3398--3440
21
2.0
22
86
4
61
34
11
27
25
1.91
6066--6109
22
2.0
22
82
8
54
22
15
6
54
1.65
8495--8533
20
1.9
20
84
5
51
25
20
2
51
1.60
23916--23975
26
2.3
25
86
8
84
11
10
23
55
1.66
24644--24708
32
2.0
32
85
5
87
50
7
20
21
1.72
24657--24729
32
2.3
31
83
6
92
47
6
21
23
1.74
24830--25008
40
5.0
32
82
10
133
51
2
24
21
1.61
24855--24907
16
3.3
16
73
19
56
52
3
24
18
1.62
24853--25028
80
2.3
74
87
7
239
53
2
22
21
1.59
24943--25007
18
3.4
18
66
22
51
55
1
20
23
1.52
24880--25028
40
3.7
40
95
0
253
52
2
22
22
1.60
25026--25059
16
2.1
17
88
5
52
58
2
20
17
1.51
25071--25141
32
2.2
33
87
2
99
52
5
21
21
1.67
25127--25180
26
2.1
26
89
6
83
55
3
14
25
1.56
25182--25257
7
10.9
7
78
4
73
57
2
23
15
1.51
25170--25236
28
2.3
29
85
10
93
59
2
20
16
1.50
25232--25319
14
6.5
14
73
19
71
52
5
22
19
1.67
25217--25279
27
2.4
25
72
15
63
57
3
23
15
1.53
25363--25439
22
3.5
22
80
7
93
53
7
19
19
1.69
25328--25536
42
5.1
42
75
12
175
50
6
22
20
1.71
25597--25643
13
3.5
13
72
16
51
61
0
25
12
1.31
25588--25646
27
2.1
27
90
3
91
59
1
22
16
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26824--26898
27
2.8
26
80
6
87
44
25
12
18
1.84
28038--28132
28
3.6
27
73
15
99
31
18
26
23
1.98
28063--28106
23
1.9
23
95
0
79
31
22
29
15
1.95
28024--28133
51
2.2
51
89
0
166
32
19
27
20
1.97

Tables:   1

The End!