Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013938.1 Corchorus capsularis cultivar CVL-1 contig13959, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53181

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
174--256
42
2.0
43
85
7
116
24
18
22
34
1.96
244--286
20
2.1
21
86
4
61
39
20
18
20
1.93
428--458
11
2.9
11
95
4
55
51
0
0
48
1.00
392--453
31
1.9
32
83
9
81
50
1
0
48
1.10
628--659
12
2.7
12
95
0
55
53
28
15
3
1.57
2167--2402
89
2.7
89
97
0
436
40
5
16
37
1.71
2527--2564
14
2.9
13
84
7
51
68
0
5
26
1.11
6366--6407
5
8.2
5
84
5
57
76
0
19
4
0.96
6606--6682
37
2.1
37
87
2
111
35
14
11
38
1.82
6622--6691
36
1.9
37
85
2
97
41
14
10
34
1.79
7129--7176
21
2.3
21
82
10
55
18
12
33
35
1.89
11563--11609
22
2.1
22
84
7
60
48
4
34
12
1.61
11778--12301
35
14.6
34
80
8
499
33
20
15
30
1.94
11778--12301
70
7.3
70
85
6
658
33
20
15
30
1.94
11778--12301
251
2.1
250
94
1
906
33
20
15
30
1.94
12400--12448
16
3.0
17
82
11
66
59
4
6
30
1.41
17147--17228
31
2.6
31
92
0
146
31
15
18
34
1.92
17778--17816
21
1.9
20
84
5
51
20
17
23
38
1.93
19160--19242
31
2.7
32
85
7
100
20
8
34
36
1.83
22849--22903
23
2.4
24
81
9
69
34
7
3
54
1.46
24537--24604
27
2.5
27
80
4
84
35
23
11
29
1.90
29021--29088
27
2.5
27
80
4
84
35
23
11
29
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32886--32930
20
2.2
20
84
4
54
66
8
8
15
1.43
43006--43099
48
1.9
49
86
2
136
30
32
15
20
1.94
43338--43487
76
2.0
76
85
2
203
28
25
8
38
1.85
43556--43740
96
1.9
96
81
4
221
23
24
12
38
1.90

Tables:   1

The End!