genome.fa.s13940.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013940.1 Corchorus capsularis cultivar CVL-1 contig13961, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  128439

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2102--2133	2	16.0	2	100	0	64	50	0	0	50	1.00
3439--3477	2	19.5	2	100	0	78	48	0	51	0	1.00
5354--5382	3	10.0	3	92	7	51	68	0	0	31	0.89
5933--5982	2	25.0	2	100	0	100	0	50	0	50	1.00
11731--11806	29	2.6	29	87	4	109	15	19	18	46	1.85
11913--11988	28	2.7	29	79	4	100	36	17	28	17	1.92
12407--12463	27	2.1	27	93	0	96	17	19	22	40	1.91
15101--15149	21	2.3	21	80	16	57	32	12	12	42	1.79
17625--17655	12	2.7	11	90	9	53	0	12	0	87	0.55
19517--19829	50	6.2	50	89	1	457	24	28	11	35	1.90
19602--19784	23	7.4	23	62	20	66	22	29	11	36	1.90
22640--22940	47	6.7	45	78	11	273	14	26	19	39	1.90
22689--22846	40	3.8	40	78	11	163	13	25	21	39	1.90
22640--22896	87	2.9	87	88	2	347	14	26	20	39	1.90
22942--23053	49	2.3	49	80	1	116	11	21	17	49	1.78
22960--23071	49	2.3	49	85	0	143	14	16	23	45	1.84
25715--25778	29	2.2	28	86	2	83	46	15	18	18	1.84
25715--25778	28	2.3	27	86	8	83	46	15	18	18	1.84
26942--27010	27	2.5	29	81	11	99	15	15	21	46	1.84
29999--30402	81	5.0	80	80	8	453	15	25	21	38	1.91
29963--30669	122	5.6	121	80	11	662	14	25	20	38	1.91
29963--30398	41	10.8	40	77	11	356	15	25	21	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30418--30715	40	6.9	40	75	15	206	14	26	19	39	1.90
30317--30498	96	1.9	98	86	6	264	13	25	21	38	1.91
30467--30718	87	2.8	88	86	5	328	15	26	19	39	1.90
30467--30715	47	5.6	45	77	10	221	14	26	19	38	1.91
30716--30750	16	2.3	15	90	5	52	8	25	5	60	1.49
30591--30862	49	5.6	48	74	7	210	15	23	17	44	1.86
36436--36488	21	2.6	21	84	3	63	30	30	32	7	1.85
40646--40733	30	3.0	29	80	12	99	18	14	29	37	1.91
40698--40772	39	1.9	39	86	0	105	16	13	29	41	1.86
45306--45343	19	2.0	19	85	10	51	39	15	5	39	1.70
45832--45887	21	2.6	21	97	2	103	14	19	46	19	1.84
48675--48717	13	3.3	13	81	9	52	16	4	20	58	1.56
49682--49867	35	5.3	35	74	12	107	22	18	5	53	1.66
49682--49741	21	2.8	21	72	18	52	23	18	8	50	1.74
49806--49887	14	5.4	14	76	18	74	17	20	6	56	1.62
49795--49867	34	2.1	35	94	2	130	19	20	6	53	1.67
49850--50230	22	17.8	22	73	15	187	20	20	3	54	1.61
50054--50102	20	2.5	20	87	12	66	20	18	6	55	1.64
50157--50203	20	2.4	19	83	16	60	19	19	4	57	1.57
50242--50341	36	3.0	33	82	8	116	23	17	7	53	1.68
51198--51249	12	4.3	12	100	0	104	7	32	50	9	1.64
59787--59829	13	3.3	13	81	9	52	18	2	20	58	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60013--60051	12	3.2	12	85	10	53	38	0	7	53	1.30
63583--63626	15	2.9	15	86	0	61	43	22	22	11	1.85
69884--69919	18	2.1	17	94	5	63	63	8	16	11	1.49
70468--70519	22	2.4	22	83	6	61	38	17	3	40	1.68
71569--71604	18	2.1	18	89	5	56	36	11	5	47	1.63
72374--72477	52	2.0	52	96	0	190	8	20	47	24	1.78
75161--75196	18	2.1	17	94	5	63	63	8	16	11	1.49
75757--75792	19	1.9	18	88	5	54	33	22	2	41	1.68
77225--77272	20	2.3	21	85	3	62	18	6	8	66	1.39
86486--86515	2	15.0	2	100	0	60	50	0	0	50	1.00
86644--86671	2	14.0	2	100	0	56	50	0	0	50	1.00
88918--88946	13	2.3	13	94	5	51	34	0	6	58	1.25
95139--95201	27	2.3	27	75	5	74	19	22	0	58	1.39
95269--95346	21	3.7	21	73	14	79	21	20	8	48	1.77
95337--95414	15	5.3	15	72	15	56	21	19	5	53	1.64
95314--95392	35	2.2	37	88	6	126	20	20	6	53	1.67
95350--95640	22	13.1	22	75	14	199	17	19	5	57	1.60
95410--95465	15	3.9	15	69	9	53	16	21	5	57	1.59
95444--95672	22	10.7	21	72	14	148	17	17	6	57	1.60
95443--95672	43	5.3	44	78	9	183	17	17	6	57	1.60
95971--96022	22	2.5	20	87	12	70	19	19	5	55	1.62
98751--98791	9	4.8	9	90	3	59	0	12	2	85	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98751--98799	26	2.0	25	84	8	64	2	12	4	81	0.91
100883--101002	40	3.1	39	83	8	147	46	8	15	29	1.75
102190--102294	38	2.7	40	85	4	133	25	17	10	46	1.79
102192--102294	41	2.6	38	84	4	125	26	17	10	45	1.81
102475--102500	13	2.0	13	100	0	52	0	23	0	76	0.78
104510--104769	107	2.5	106	91	3	402	41	9	8	40	1.67
114022--114074	23	2.3	23	84	12	65	35	1	20	41	1.64
114735--114769	11	3.2	11	83	0	52	80	14	2	2	0.95
119054--119294	50	4.8	50	97	0	448	19	25	25	29	1.99
119662--120168	90	5.6	90	90	2	753	39	16	11	33	1.84
119662--120168	183	2.8	182	91	1	802	39	16	11	33	1.84
127499--127632	30	4.4	30	81	5	153	41	16	18	23	1.89
128186--128214	2	15.0	2	92	7	51	51	0	0	48	1.00

Tables:   1

The End!