Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01013942.1 Corchorus capsularis cultivar CVL-1 contig13963, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123567
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.31
Found at i:7 original size:2 final size:2
Alignment explanation
Indices: 1--52 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
43 CT CT CT CT CT
1 CT CT CT CT CT
53 GTATTTTTTT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:11333 original size:14 final size:14
Alignment explanation
Indices: 11314--11343 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
11304 GCCTTCTTTG
*
11314 TTTTTCTTTTTGTT
1 TTTTTCTTTTTATT
11328 TTTTTCTTTTTATT
1 TTTTTCTTTTTATT
11342 TT
1 TT
11344 ACTATGAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.03, C:0.07, G:0.03, T:0.87
Consensus pattern (14 bp):
TTTTTCTTTTTATT
Found at i:14476 original size:48 final size:48
Alignment explanation
Indices: 14403--14777 Score: 524
Period size: 48 Copynumber: 7.8 Consensus size: 48
14393 TCAAATGGTT
* * * * *
14403 TTCAGTGTTTCTTTCCTA-TTTTGCCCTTTCCGGTCGGAAGGTGCCGGC
1 TTCAGTGTCTATTTCC-AGTTTTGCCCTTCCCGGTCGGAAGGTGCAGTC
* *
14451 TTCAGTGTCTATTTCCAGTTGTGCCCTTCCAGGTCGGAAGGTGGC-GTC
1 TTCAGTGTCTATTTCCAGTTTTGCCCTTCCCGGTCGGAAGGT-GCAGTC
*
14499 TTCAGTGTCTATTTCCAGATTTGCCCTTCCCGGTCGGAAGGTGCAGTC
1 TTCAGTGTCTATTTCCAGTTTTGCCCTTCCCGGTCGGAAGGTGCAGTC
*
14547 TTCAGTGTTTATTTCCAGTTTTGCCCTTCCCGGTCGGAAGGTGCAGTC
1 TTCAGTGTCTATTTCCAGTTTTGCCCTTCCCGGTCGGAAGGTGCAGTC
* * *
14595 TTCGGTGTTTATTTCCAGTTTTGCCCTTCCCAGTCGGAAGGTGCAGTC
1 TTCAGTGTCTATTTCCAGTTTTGCCCTTCCCGGTCGGAAGGTGCAGTC
* * * *
14643 TTCAGTGTTTATTTCCAGTTTTGCCCTTCCCAGTCGGATGGTGCAGTT
1 TTCAGTGTCTATTTCCAGTTTTGCCCTTCCCGGTCGGAAGGTGCAGTC
14691 TTCAGTGTCTCA-TTCCAGTTTTGCCCTTCCCGGTCGGAAGGTGCAGTC
1 TTCAGTGTCT-ATTTCCAGTTTTGCCCTTCCCGGTCGGAAGGTGCAGTC
* * *
14739 TTTAGTGTCTCTTTCCTGTTTTGCCCTT-CCGGTCGGAAG
1 TTCAGTGTCTATTTCCAGTTTTGCCCTTCCCGGTCGGAAG
14778 ACGCTAGATT
Statistics
Matches: 299, Mismatches: 23, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
47 14 0.05
48 282 0.94
49 3 0.01
ACGTcount: A:0.12, C:0.26, G:0.25, T:0.37
Consensus pattern (48 bp):
TTCAGTGTCTATTTCCAGTTTTGCCCTTCCCGGTCGGAAGGTGCAGTC
Found at i:21997 original size:16 final size:17
Alignment explanation
Indices: 21960--21996 Score: 60
Period size: 15 Copynumber: 2.3 Consensus size: 17
21950 AAGAGGTCGC
21960 AAAAAGAAAGAAAAAGA
1 AAAAAGAAAGAAAAAGA
21977 AAAAAG-AAG-AAAAGA
1 AAAAAGAAAGAAAAAGA
21992 AAAAA
1 AAAAA
21997 ACTGGGCCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 11 0.55
16 3 0.15
17 6 0.30
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (17 bp):
AAAAAGAAAGAAAAAGA
Found at i:21997 original size:17 final size:17
Alignment explanation
Indices: 21960--21997 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
21950 AAGAGGTCGC
*
21960 AAAAAGAAAGAAAAAGA
1 AAAAAGAAAGAAAAAAA
*
21977 AAAAAG-AAGAAAAGAA
1 AAAAAGAAAGAAAAAAA
21993 AAAAA
1 AAAAA
21998 CTGGGCCTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (17 bp):
AAAAAGAAAGAAAAAAA
Found at i:22801 original size:18 final size:18
Alignment explanation
Indices: 22778--22841 Score: 74
Period size: 18 Copynumber: 3.6 Consensus size: 18
22768 GTGCATTTTG
*
22778 CATTACATCAGCGTACAA
1 CATTACATCAGCATACAA
* * *
22796 CATTACATTAGCATTCGA
1 CATTACATCAGCATACAA
* *
22814 CATTACATCAACATCCAA
1 CATTACATCAGCATACAA
22832 CATTACATCA
1 CATTACATCA
22842 TCATTGTAAC
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.39, C:0.28, G:0.06, T:0.27
Consensus pattern (18 bp):
CATTACATCAGCATACAA
Found at i:23001 original size:35 final size:35
Alignment explanation
Indices: 22949--23041 Score: 116
Period size: 35 Copynumber: 2.7 Consensus size: 35
22939 TTTAAAGGCG
*
22949 GATGGCTCAGTGAAGCATCTTCAAAGTCAGAATT-A
1 GATGACTCAGTGAAGCATCTTCAAAGT-AGAATTCA
* * *
22984 GATGACTCAGTGTAGCATCTTCAAAGTGGGATTCA
1 GATGACTCAGTGAAGCATCTTCAAAGTAGAATTCA
* *
23019 GATGACTCGGTAAAGCATCTTCA
1 GATGACTCAGTGAAGCATCTTCA
23042 GACATAAGGA
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
34 4 0.08
35 46 0.92
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (35 bp):
GATGACTCAGTGAAGCATCTTCAAAGTAGAATTCA
Found at i:23560 original size:6 final size:6
Alignment explanation
Indices: 23549--23597 Score: 57
Period size: 6 Copynumber: 8.2 Consensus size: 6
23539 ATGGATTTTA
*
23549 TTATTT TTATTT TTATTT TTA-TT TTATTT ATTTTATT TTA-TT TTATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT -TTAT-TT TTATTT TTATTT
23597 T
1 T
23598 CCATATTGGG
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
5 10 0.27
6 20 0.54
7 5 0.14
8 2 0.05
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (6 bp):
TTATTT
Found at i:23562 original size:15 final size:14
Alignment explanation
Indices: 23543--23597 Score: 53
Period size: 12 Copynumber: 3.9 Consensus size: 14
23533 TTTATCATGG
*
23543 ATTTTATTATTTTT
1 ATTTTTTTATTTTT
23557 A--TTTTTATTTTT
1 ATTTTTTTATTTTT
23569 ATTTTATTTA-TTTT
1 ATTTT-TTTATTTTT
23583 ATTTTATTTTATTTT
1 A-TTT-TTTTATTTT
23598 CCATATTGGG
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
12 11 0.32
14 8 0.24
15 11 0.32
16 4 0.12
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (14 bp):
ATTTTTTTATTTTT
Found at i:23567 original size:5 final size:5
Alignment explanation
Indices: 23543--23597 Score: 69
Period size: 5 Copynumber: 11.0 Consensus size: 5
23533 TTTATCATGG
*
23543 ATTTT ATTAT -TTTT ATTTTT ATTTTT ATTTT A-TTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT A-TTTT A-TTTT ATTTT ATTTT ATTTT ATTTT ATTTT
23593 ATTTT
1 ATTTT
23598 CCATATTGGG
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
4 7 0.16
5 27 0.60
6 11 0.24
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:23604 original size:19 final size:18
Alignment explanation
Indices: 23553--23597 Score: 65
Period size: 19 Copynumber: 2.5 Consensus size: 18
23543 ATTTTATTAT
23553 TTTTATTTTTAT-TTTTA
1 TTTTATTTTTATATTTTA
*
23570 TTTTATTTATTTTATTTTA
1 TTTTATTT-TTATATTTTA
23589 TTTTATTTT
1 TTTTATTTT
23598 CCATATTGGG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 8 0.32
18 4 0.16
19 13 0.52
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTTATTTTTATATTTTA
Found at i:26821 original size:18 final size:18
Alignment explanation
Indices: 26798--26834 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
26788 ACAATTTAAT
26798 TCGGTGTAATTAAGTAAA
1 TCGGTGTAATTAAGTAAA
26816 TCGGTGTAATTAAGTAAA
1 TCGGTGTAATTAAGTAAA
26834 T
1 T
26835 TGGTAATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.05, G:0.22, T:0.35
Consensus pattern (18 bp):
TCGGTGTAATTAAGTAAA
Found at i:26869 original size:43 final size:43
Alignment explanation
Indices: 26816--26924 Score: 200
Period size: 43 Copynumber: 2.5 Consensus size: 43
26806 ATTAAGTAAA
*
26816 TCGGTGTAATTAAGTAAATTGGTAATTTGGTAAACAACTTAAT
1 TCGGTGTAATTAAGTAAATTGGTAATTTGGTAAACAACTCAAT
*
26859 TCGGTGTAATTAAGTAAATCGGTAATTTGGTAAACAACTCAAT
1 TCGGTGTAATTAAGTAAATTGGTAATTTGGTAAACAACTCAAT
26902 TCGGTGTAATTAAGTAAATTGGT
1 TCGGTGTAATTAAGTAAATTGGT
26925 GATTAAATTA
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 63 1.00
ACGTcount: A:0.36, C:0.08, G:0.20, T:0.36
Consensus pattern (43 bp):
TCGGTGTAATTAAGTAAATTGGTAATTTGGTAAACAACTCAAT
Found at i:26974 original size:99 final size:99
Alignment explanation
Indices: 26776--27321 Score: 896
Period size: 99 Copynumber: 5.5 Consensus size: 99
26766 CAAGAATTAA
* * * *
26776 GTAATTTGGTAAACAATTTAATTCGGTGTAATTAAGTAAATCGGTGTAATTAAGTAAATTGGTAA
1 GTAATTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGGTG--ATTAAATTAA---GTAA
*
26841 TTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATCG
61 TTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATTG
*
26880 GTAATTTGGTAAACAACTCAATTCGGTGTAATTAAGTAAATTGGTGATTAAATTAAGTAATTTGG
1 GTAATTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGGTGATTAAATTAAGTAATTTGG
*
26945 TAAACAACTTAATTCGGCGTAATTAAGTAAATTG
66 TAAACAACTTAATTCGGTGTAATTAAGTAAATTG
*
26979 AG-AATTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGGAGATTAAATTAAGTAATTTG
1 -GTAATTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGGTGATTAAATTAAGTAATTTG
27043 GTAAACAACTTAATTCGGTGTAATTAAGTAAATTG
65 GTAAACAACTTAATTCGGTGTAATTAAGTAAATTG
*
27078 GTAATTTGGGTAAACAACTTAATTCGATGTAATTAAGTAAATTGGTGATTAAATTAAGTAATTTG
1 GTAATTT-GGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGGTGATTAAATTAAGTAATTTG
*
27143 GTAAACAACTTAATTCGGCGTAATTAAGTAAATTG
65 GTAAACAACTTAATTCGGTGTAATTAAGTAAATTG
*
27178 GTAATTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGGAGATTAAATTAAGTAATTTGG
1 GTAATTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGGTGATTAAATTAAGTAATTTGG
27243 TAAACAACTTAATTCGGTGTAATTAAGTAAATTG
66 TAAACAACTTAATTCGGTGTAATTAAGTAAATTG
** *
27277 GTAATCCGGTAAACAACTTAATTCGATGTAATTAAGTAAATTGGT
1 GTAATTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGGT
27322 AATTTGGTAA
Statistics
Matches: 419, Mismatches: 20, Indels: 11
0.93 0.04 0.02
Matches are distributed among these distances:
98 1 0.00
99 270 0.64
100 97 0.23
102 8 0.02
104 43 0.10
ACGTcount: A:0.39, C:0.07, G:0.18, T:0.36
Consensus pattern (99 bp):
GTAATTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGGTGATTAAATTAAGTAATTTGG
TAAACAACTTAATTCGGTGTAATTAAGTAAATTG
Found at i:26986 original size:43 final size:44
Alignment explanation
Indices: 26928--27468 Score: 394
Period size: 43 Copynumber: 11.3 Consensus size: 44
26918 AATTGGTGAT
*
26928 TAAATTAAGTAATTTGGTAAACAACTTAATTCGGCGTAATTAAG
1 TAAATTGAGTAATTTGGTAAACAACTTAATTCGGCGTAATTAAG
*
26972 TAAATTGAG-AATTTGGTAAACAACTTAATTCGGTGTAATTAAG
1 TAAATTGAGTAATTTGGTAAACAACTTAATTCGGCGTAATTAAG
*
27015 TAAATTGGAGATTAAATTAAGTAATTTGGTAAACAACTTAATTCGGTGTAATTAAG
1 TAAATT---G---------AGTAATTTGGTAAACAACTTAATTCGGCGTAATTAAG
**
27071 TAAATTG-GTAATTTGGGTAAACAACTTAATTCGATGTAATTAAG
1 TAAATTGAGTAATTT-GGTAAACAACTTAATTCGGCGTAATTAAG
27115 TAAATTGGTGATTAAATTAAGTAATTTGGTAAACAACTTAATTCGGCGTAATTAAG
1 TAAA-T--TG---------AGTAATTTGGTAAACAACTTAATTCGGCGTAATTAAG
*
27171 TAAATTG-GTAATTTGGTAAACAACTTAATTCGGTGTAATTAAG
1 TAAATTGAGTAATTTGGTAAACAACTTAATTCGGCGTAATTAAG
*
27214 TAAATTGGAGATTAAATTAAGTAATTTGGTAAACAACTTAATTCGGTGTAATTAAG
1 TAAATT---G---------AGTAATTTGGTAAACAACTTAATTCGGCGTAATTAAG
** **
27270 TAAATTG-GTAATCCGGTAAACAACTTAATTCGATGTAATTAAG
1 TAAATTGAGTAATTTGGTAAACAACTTAATTCGGCGTAATTAAG
*
27313 TAAATTG-GTAATTTGGTAAACAACTTAATTCGGTGTAATTAGGTAAATTGTTG
1 TAAATTGAGTAATTTGGTAAACAACTTAATTCGGCGTAA-T---T-AA-----G
* * *
27366 ATTAAATTTAAGTAATTGGGTAAACAACTTAATTCGGTGTAATTAAG
1 --TAAATTG-AGTAATTTGGTAAACAACTTAATTCGGCGTAATTAAG
* * * *
27413 TAAATTG-GTAATTTGGTAATCAAGTTAATTCAGTGTAATTAAG
1 TAAATTGAGTAATTTGGTAAACAACTTAATTCGGCGTAATTAAG
* *
27456 CAATTTGA-TAATT
1 TAAATTGAGTAATT
27469 AGATTAGGTA
Statistics
Matches: 421, Mismatches: 21, Indels: 111
0.76 0.04 0.20
Matches are distributed among these distances:
43 197 0.47
44 41 0.10
45 7 0.02
46 2 0.00
47 4 0.01
48 2 0.00
52 2 0.00
53 6 0.01
55 9 0.02
56 114 0.27
57 37 0.09
ACGTcount: A:0.39, C:0.07, G:0.18, T:0.36
Consensus pattern (44 bp):
TAAATTGAGTAATTTGGTAAACAACTTAATTCGGCGTAATTAAG
Found at i:27042 original size:56 final size:55
Alignment explanation
Indices: 26972--27277 Score: 381
Period size: 56 Copynumber: 5.9 Consensus size: 55
26962 CGTAATTAAG
*
26972 TAAATTGAG-AATTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGGAGAT
1 TAAATTAAGTAATTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGG-GAT
27027 TAAATTAAGTAATTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATT-GG--
1 TAAATTAAGTAATTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGGGAT
* *
27079 -----TAA-T--TTGGGTAAACAACTTAATTCGATGTAATTAAGTAAATTGGTGAT
1 TAAATTAAGTAATTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGG-GAT
*
27127 TAAATTAAGTAATTTGGTAAACAACTTAATTCGGCGTAATTAAGTAAATT--G--
1 TAAATTAAGTAATTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGGGAT
27178 --------GTAATTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGGAGAT
1 TAAATTAAGTAATTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGG-GAT
27226 TAAATTAAGTAATTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGG
1 TAAATTAAGTAATTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGG
27278 TAATCCGGTA
Statistics
Matches: 218, Mismatches: 7, Indels: 51
0.79 0.03 0.18
Matches are distributed among these distances:
43 41 0.19
44 36 0.17
45 1 0.00
46 3 0.01
47 3 0.01
53 4 0.02
54 2 0.01
55 9 0.04
56 119 0.55
ACGTcount: A:0.40, C:0.06, G:0.18, T:0.36
Consensus pattern (55 bp):
TAAATTAAGTAATTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGGGAT
Found at i:27144 original size:199 final size:198
Alignment explanation
Indices: 26776--27321 Score: 932
Period size: 199 Copynumber: 2.7 Consensus size: 198
26766 CAAGAATTAA
* * * * *
26776 GTAATTTGGTAAACAATTTAATTCGGTGTAATTAAGTAAATCGGTGTAATTAAGTAAATTGGTAA
1 GTAATTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGGAG--ATTAAATTAA---GTAA
* * *
26841 TTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATCGGTAATTTGGTAAACAACTCAATTCGG
61 TTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGGTAATTTGGTAAACAACTTAATTCGA
26906 TGTAATTAAGTAAATTGGTGATTAAATTAAGTAATTTGGTAAACAACTTAATTCGGCGTAATTAA
126 TGTAATTAAGTAAATTGGTGATTAAATTAAGTAATTTGGTAAACAACTTAATTCGGCGTAATTAA
26971 GTAAATTG
191 GTAAATTG
26979 AG-AATTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGGAGATTAAATTAAGTAATTTG
1 -GTAATTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGGAGATTAAATTAAGTAATTTG
27043 GTAAACAACTTAATTCGGTGTAATTAAGTAAATTGGTAATTTGGGTAAACAACTTAATTCGATGT
65 GTAAACAACTTAATTCGGTGTAATTAAGTAAATTGGTAATTT-GGTAAACAACTTAATTCGATGT
27108 AATTAAGTAAATTGGTGATTAAATTAAGTAATTTGGTAAACAACTTAATTCGGCGTAATTAAGTA
129 AATTAAGTAAATTGGTGATTAAATTAAGTAATTTGGTAAACAACTTAATTCGGCGTAATTAAGTA
27173 AATTG
194 AATTG
27178 GTAATTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGGAGATTAAATTAAGTAATTTGG
1 GTAATTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGGAGATTAAATTAAGTAATTTGG
**
27243 TAAACAACTTAATTCGGTGTAATTAAGTAAATTGGTAATCCGGTAAACAACTTAATTCGATGTAA
66 TAAACAACTTAATTCGGTGTAATTAAGTAAATTGGTAATTTGGTAAACAACTTAATTCGATGTAA
27308 TTAAGTAAATTGGT
131 TTAAGTAAATTGGT
27322 AATTTGGTAA
Statistics
Matches: 330, Mismatches: 10, Indels: 10
0.94 0.03 0.03
Matches are distributed among these distances:
198 88 0.27
199 192 0.58
201 8 0.02
203 41 0.12
204 1 0.00
ACGTcount: A:0.39, C:0.07, G:0.18, T:0.36
Consensus pattern (198 bp):
GTAATTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGGAGATTAAATTAAGTAATTTGG
TAAACAACTTAATTCGGTGTAATTAAGTAAATTGGTAATTTGGTAAACAACTTAATTCGATGTAA
TTAAGTAAATTGGTGATTAAATTAAGTAATTTGGTAAACAACTTAATTCGGCGTAATTAAGTAAA
TTG
Found at i:27290 original size:242 final size:242
Alignment explanation
Indices: 27042--27523 Score: 761
Period size: 242 Copynumber: 2.0 Consensus size: 242
27032 TAAGTAATTT
*
27042 GGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGGTAATTTGGGTAAACAACTTAATTCGATG
1 GGTAAACAACTTAATTCGATGTAATTAAGTAAATTGGTAATTT-GGTAAACAACTTAATTCGATG
*
27107 TAATTAAGTAAATTGGTGATTAAA-TTAAGTAATTTGGTAAACAACTTAATTCGGCGTAATTAAG
65 TAATTAAGTAAATTGGTGATTAAATTTAAGTAATTGGGTAAACAACTTAATTCGGCGTAATTAAG
* *
27171 TAAATTGGTAATTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGGA-GATTAAATTAAG
130 TAAATTGGTAATTTGGTAAACAACTTAATTCAGTGTAATTAAG-AAATTGGATAATTAAATTAAG
* * *
27235 TAATTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGGTAATCC
194 TAACTTGGTAAACAACTTAATTCGGTGCAATTAAGAAAATTGGTAATCC
*
27284 GGTAAACAACTTAATTCGATGTAATTAAGTAAATTGGTAATTTGGTAAACAACTTAATTCGGTGT
1 GGTAAACAACTTAATTCGATGTAATTAAGTAAATTGGTAATTTGGTAAACAACTTAATTCGATGT
* * *
27349 AATTAGGTAAATTGTTGATTAAATTTAAGTAATTGGGTAAACAACTTAATTCGGTGTAATTAAGT
66 AATTAAGTAAATTGGTGATTAAATTTAAGTAATTGGGTAAACAACTTAATTCGGCGTAATTAAGT
* * * * * *
27414 AAATTGGTAATTTGGTAATCAAGTTAATTCAGTGTAATTAAGCAATTTGATAATTAGATTAGGTA
131 AAATTGGTAATTTGGTAAACAACTTAATTCAGTGTAATTAAGAAATTGGATAATTAAATTAAGTA
**
27479 ACTTGGTAATTAACTTAATTCGGTGCAATTAAGAAAATTGGTAAT
196 ACTTGGTAAACAACTTAATTCGGTGCAATTAAGAAAATTGGTAAT
27524 TAAGTTAAGT
Statistics
Matches: 219, Mismatches: 19, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
241 48 0.22
242 171 0.78
ACGTcount: A:0.38, C:0.07, G:0.18, T:0.36
Consensus pattern (242 bp):
GGTAAACAACTTAATTCGATGTAATTAAGTAAATTGGTAATTTGGTAAACAACTTAATTCGATGT
AATTAAGTAAATTGGTGATTAAATTTAAGTAATTGGGTAAACAACTTAATTCGGCGTAATTAAGT
AAATTGGTAATTTGGTAAACAACTTAATTCAGTGTAATTAAGAAATTGGATAATTAAATTAAGTA
ACTTGGTAAACAACTTAATTCGGTGCAATTAAGAAAATTGGTAATCC
Found at i:27400 original size:100 final size:99
Alignment explanation
Indices: 27284--27524 Score: 322
Period size: 100 Copynumber: 2.4 Consensus size: 99
27274 TTGGTAATCC
* *
27284 GGTAAACAACTTAATTCGATGTAATTAAGTAAATTGGTAATTTGGTAAACAACTTAATTCGGTGT
1 GGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGGTAATTTGGTAAACAACTTAATTCAGTGT
* * * *
27349 AATTAGGTAAATTGTTGATTAAATTTAAGTAA-TT
66 AATTAAGCAAATTGATAATTAAA-TTAAGTAACTT
* *
27383 GGGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGGTAATTTGGTAATCAAGTTAATTCAGTG
1 -GGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGGTAATTTGGTAAACAACTTAATTCAGTG
* * *
27448 TAATTAAGCAATTTGATAATTAGATTAGGTAACTT
65 TAATTAAGCAAATTGATAATTAAATTAAGTAACTT
** * *
27483 GGTAATTAACTTAATTCGGTGCAATTAAGAAAATTGGTAATT
1 GGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGGTAATT
27525 AAGTTAAGTA
Statistics
Matches: 125, Mismatches: 15, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
99 45 0.36
100 80 0.64
ACGTcount: A:0.38, C:0.07, G:0.18, T:0.37
Consensus pattern (99 bp):
GGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGGTAATTTGGTAAACAACTTAATTCAGTGT
AATTAAGCAAATTGATAATTAAATTAAGTAACTT
Found at i:27487 original size:298 final size:284
Alignment explanation
Indices: 26776--27543 Score: 782
Period size: 298 Copynumber: 2.6 Consensus size: 284
26766 CAAGAATTAA
* * * * *
26776 GTAATTT-GGTAAACAATTTAATTCGGTGTAATTAAGTAAATCGGTGTAATTAAGTAAATTGGTA
1 GTAATTTGGGTAAACAACTTAATTCGATGTAATTAAGTAAAT-TG-GTAATTAAATCAA---GTA
* ** * *
26840 ATTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATCGGTAATTTGGTAAACAACTCAATTCG
61 ATTAGGTAAACAAC-TAATTCGGCATAATTAAG--AATTGGTAATTTGGTAAACAACTTAATTCG
*
26905 GTGTAATTAAGTAAATTGGTGATTAAATTAAGTAATTTGGTAAACAACTTAATTCGGCGTAATTA
123 GTGTAATTAAGTAAATTGGAGATTAAATTAAGTAATTTGGTAAACAACTTAATTCGGCGTAATTA
** *
26970 AGTAAATTGAGAATTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGGAGATTAAATTAA
188 AGTAAATTGAGAATCCGGTAAACAACTTAATTCGATGTAATTAAGTAAATT-G-G---------A
27035 GTAATTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATTG
242 GTAATTTGGTAAACAACTTAATTCGGTGTAATTAAGTAAATTG
* * *
27078 GTAATTTGGGTAAACAACTTAATTCGATGTAATTAAGTAAATTGGTGATTAAATTAAGTAATTTG
1 GTAATTTGGGTAAACAACTTAATTCGATGTAATTAAGTAAATTGGTAATTAAATCAAGTAATTAG
*
27143 GTAAACAACTTAATTCGGCGTAATTAAGTAAATTGGTAATTTGGTAAACAACTTAATTCGGTGTA
66 GTAAACAAC-TAATTCGGCATAATTAAG--AATTGGTAATTTGGTAAACAACTTAATTCGGTGTA
*
27208 ATTAAGTAAATTGGAGATTAAATTAAGTAATTTGGTAAACAACTTAATTCGGTGTAATTAAGTAA
128 ATTAAGTAAATTGGAGATTAAATTAAGTAATTTGGTAAACAACTTAATTCGGCGTAATTAAGTAA
27273 ATTG-GTAATCCGGTAAACAACTTAATTCGATGTAATTAAGTAAATT-G-GTAATTTGGTAAACA
193 ATTGAG-AATCCGGTAAACAACTTAATTCGATGTAATTAAGTAAATTGGAGTAATTTGGTAAACA
*
27335 ACTTAATTCGGTGTAATTAGGTAAATTG
257 ACTTAATTCGGTGTAATTAAGTAAATTG
*
27363 TTGATTAAATTTAAGTAATTGGGTAAACAACTTAATTCGGTGTAATTAAGTAAATTGGTAATTTG
1 --G--------TAA-T--TTGGGTAAACAACTTAATTCGATGTAATTAAGTAAATTGGTAA-TT-
* ** * *
27428 GTAATCAAGTTAATTCAGTGTAATTAAGC-AATT-TG-ATAATT-AG-ATTAGGTAACTTGGTAA
51 -AAATCAAG-TAATT-AG-GTAAACAA-CTAATTCGGCATAATTAAGAATT-GGTAATTTGGTAA
** * * *
27488 TTAACTTAATTCGGTGCAATTAAGAAAATTGGTA-ATTAAGTTAAGTAATTTGGTAA
110 ACAACTTAATTCGGTGTAATTAAGTAAATTGG-AGATTAAATTAAGTAATTTGGTAA
27544 TTAAATTAAG
Statistics
Matches: 412, Mismatches: 30, Indels: 52
0.83 0.06 0.11
Matches are distributed among these distances:
285 42 0.10
287 1 0.00
295 4 0.01
296 1 0.00
297 4 0.01
298 276 0.67
299 3 0.01
300 2 0.00
301 21 0.05
302 14 0.03
303 37 0.09
304 6 0.01
305 1 0.00
ACGTcount: A:0.39, C:0.07, G:0.18, T:0.36
Consensus pattern (284 bp):
GTAATTTGGGTAAACAACTTAATTCGATGTAATTAAGTAAATTGGTAATTAAATCAAGTAATTAG
GTAAACAACTAATTCGGCATAATTAAGAATTGGTAATTTGGTAAACAACTTAATTCGGTGTAATT
AAGTAAATTGGAGATTAAATTAAGTAATTTGGTAAACAACTTAATTCGGCGTAATTAAGTAAATT
GAGAATCCGGTAAACAACTTAATTCGATGTAATTAAGTAAATTGGAGTAATTTGGTAAACAACTT
AATTCGGTGTAATTAAGTAAATTG
Found at i:27545 original size:56 final size:56
Alignment explanation
Indices: 27420--27552 Score: 160
Period size: 56 Copynumber: 2.4 Consensus size: 56
27410 AAGTAAATTG
* * * * * *
27420 GTAATTTGGTAATCAAGTTAATTCAGTGTAATTAAGCAATTTGATAATTAGATTAG
1 GTAATTTGGTAATTAAATTAATTCAGTGCAATTAAGAAAATTGATAATTAGATTAA
* * * *
27476 GTAACTTGGTAATTAACTTAATTCGGTGCAATTAAGAAAATTGGTAATTA-AGTTAA
1 GTAATTTGGTAATTAAATTAATTCAGTGCAATTAAGAAAATTGATAATTAGA-TTAA
27532 GTAATTTGGTAATTAAATTAA
1 GTAATTTGGTAATTAAATTAA
27553 GTAATAAACT
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
55 1 0.02
56 64 0.98
ACGTcount: A:0.39, C:0.05, G:0.17, T:0.38
Consensus pattern (56 bp):
GTAATTTGGTAATTAAATTAATTCAGTGCAATTAAGAAAATTGATAATTAGATTAA
Found at i:27554 original size:21 final size:21
Alignment explanation
Indices: 27505--27557 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
27495 AATTCGGTGC
* *
27505 AATTAAGAAAATTGGTAATTA
1 AATTAAGTAATTTGGTAATTA
*
27526 AGTTAAGTAATTTGGTAATTA
1 AATTAAGTAATTTGGTAATTA
27547 AATTAAGTAAT
1 AATTAAGTAAT
27558 AAACTCAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.15, T:0.38
Consensus pattern (21 bp):
AATTAAGTAATTTGGTAATTA
Found at i:38724 original size:2 final size:2
Alignment explanation
Indices: 38717--38750 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
38707 TTTGAAAAGA
38717 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
38751 AGACTAACTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:39665 original size:32 final size:32
Alignment explanation
Indices: 39603--39667 Score: 78
Period size: 32 Copynumber: 2.0 Consensus size: 32
39593 ATTGTTCCAA
* *
39603 TTTACTTTCTTTTTGGGATCGGCGTCTGCTAC
1 TTTACTTTCTTTTTGGGATCGACATCTGCTAC
* *
39635 TTTATTTTCTTTTTGGGGAT-GACATTTGCTAC
1 TTTACTTTCTTTTT-GGGATCGACATCTGCTAC
39667 T
1 T
39668 GTCTAGTTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
32 23 0.82
33 5 0.18
ACGTcount: A:0.12, C:0.17, G:0.20, T:0.51
Consensus pattern (32 bp):
TTTACTTTCTTTTTGGGATCGACATCTGCTAC
Found at i:41879 original size:23 final size:23
Alignment explanation
Indices: 41834--41879 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
41824 TTAAAAGATG
* ** *
41834 CAATTGAGTCCCTGATTTTACAT
1 CAATTAAGTCCCTGAAGTCACAT
41857 CAATTAAGTCCCTGAAGTCACAT
1 CAATTAAGTCCCTGAAGTCACAT
41880 TTTAATATGA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.33
Consensus pattern (23 bp):
CAATTAAGTCCCTGAAGTCACAT
Found at i:44746 original size:18 final size:18
Alignment explanation
Indices: 44723--44812 Score: 103
Period size: 18 Copynumber: 5.0 Consensus size: 18
44713 GTCAATCCTA
*
44723 GGGAACTAACTTTGAATG
1 GGGAACTGACTTTGAATG
*
44741 GGGAACCGACTTTGAATG
1 GGGAACTGACTTTGAATG
44759 GGGAACT-AGCTTTGAATG
1 GGGAACTGA-CTTTGAATG
* *
44777 GAGAACTGACTTGGAAT-
1 GGGAACTGACTTTGAATG
*
44794 GAGAGACTGACTTTGAATG
1 GGGA-ACTGACTTTGAATG
44813 ATCCTTAACA
Statistics
Matches: 62, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
17 5 0.08
18 56 0.90
19 1 0.02
ACGTcount: A:0.31, C:0.12, G:0.31, T:0.26
Consensus pattern (18 bp):
GGGAACTGACTTTGAATG
Found at i:46974 original size:76 final size:75
Alignment explanation
Indices: 46830--46979 Score: 210
Period size: 76 Copynumber: 2.0 Consensus size: 75
46820 TTCTTTTGAG
* * * *
46830 TCCTTATATACTCAGATCTGCCTCCAACGGTCATTTCCACATTAAATGCAAATCTTTCAAATCTG
1 TCCTTAAATACTCAGATCTGCCTCCAACGATCATTTCCACATCAAATGCAAATCCTTCAAATCTG
46895 TCAATTTATT
66 TCAATTTATT
* * ** *
46905 TCCTTAAATACTTAGATTTGCCTCCAACGATCATATTCTTCATCAATTGCAAATCCTTCAAATCT
1 TCCTTAAATACTCAGATCTGCCTCCAACGATCAT-TTCCACATCAAATGCAAATCCTTCAAATCT
46970 GTCAATTTAT
65 GTCAATTTAT
46980 GGCGTTGAAA
Statistics
Matches: 65, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
75 30 0.46
76 35 0.54
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (75 bp):
TCCTTAAATACTCAGATCTGCCTCCAACGATCATTTCCACATCAAATGCAAATCCTTCAAATCTG
TCAATTTATT
Found at i:47668 original size:17 final size:17
Alignment explanation
Indices: 47646--47678 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
47636 TAAAGCAGAA
*
47646 ATAAAGGCATCAGAGCT
1 ATAAAGACATCAGAGCT
47663 ATAAAGACATCAGAGC
1 ATAAAGACATCAGAGC
47679 ATTTAGCTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.18, G:0.21, T:0.15
Consensus pattern (17 bp):
ATAAAGACATCAGAGCT
Found at i:47740 original size:19 final size:19
Alignment explanation
Indices: 47695--47787 Score: 71
Period size: 19 Copynumber: 4.7 Consensus size: 19
47685 CTAAAACAAG
* *
47695 GCATCAGAGCAAATTATAG
1 GCATCAGAGCAAAATATAA
* * *
47714 GTAACAGAGCAAACTATAA
1 GCATCAGAGCAAAATATAA
*
47733 GCATCAGAGCTATAAATAAAA
1 GCATCAGAGC-A-AAATATAA
* *
47754 ACATCAGAGC-AAGTCATAA
1 GCATCAGAGCAAAAT-ATAA
47773 GCATCAGAGCTAAAA
1 GCATCAGAGC-AAAA
47788 GATATCAGAG
Statistics
Matches: 56, Mismatches: 13, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
18 3 0.05
19 35 0.62
20 1 0.02
21 17 0.30
ACGTcount: A:0.48, C:0.17, G:0.17, T:0.17
Consensus pattern (19 bp):
GCATCAGAGCAAAATATAA
Found at i:52485 original size:242 final size:241
Alignment explanation
Indices: 52056--52539 Score: 878
Period size: 242 Copynumber: 2.0 Consensus size: 241
52046 AATTCTTCAA
* *
52056 TAGTTTTCAAATCTTCAAATATCTTCAATCACGAACTCCGTATTTTCAAATCTTCATTCCAGATG
1 TAGTTTTCAAATCTTCAAATATCTTCAATCACGAACTCCGCATCTTCAAATCTTCATTCCAGATG
52121 GCTAAGTCCATAGTTGAGTAAAAAGTCACTAAAATAGCTCCAAAAAGAGTGAAAAACAATAAGTT
66 GCTAAGTCCATAGTTGAGTAAAAAGTCACTAAAATAGCTCCAAAAAGAGTGAAAAACAATAAGTT
* * *
52186 TTCACTTTTCTTGTCTTCAAGAGCTAAAAACACAAATACTAACAAAATAGTGTAAAAACACATAT
131 TTCACTTTTCCTGTCTTCAAGACCTAAAAACACAAATACTAACAAAATAGGGTAAAAACACATAT
52251 AAAAGTAGTAAAAAGTATAGAAAAATAGCTATAAAAACATGCATAAT
196 AAAAGTAGTAAAAAGTATAG-AAAATAGCTATAAAAACATGCATAAT
**
52298 TAGTTTTCAAATCTTCAAATATCTTCAATCACGAACTTTGCATCTTCAAATCTTCATTCCAGATG
1 TAGTTTTCAAATCTTCAAATATCTTCAATCACGAACTCCGCATCTTCAAATCTTCATTCCAGATG
52363 GCTAAGTCCATAGTTGAGTAAAAAGTCACTAAAATAGCTCCAAAAAGAGTGAAAAACAATAAGTT
66 GCTAAGTCCATAGTTGAGTAAAAAGTCACTAAAATAGCTCCAAAAAGAGTGAAAAACAATAAGTT
*
52428 TTCACTTTTCCTGTCTTCAAGACCTAAAAACACAAATACTAACAAAATAGGGTAAAAATACATAT
131 TTCACTTTTCCTGTCTTCAAGACCTAAAAACACAAATACTAACAAAATAGGGTAAAAACACATAT
*
52493 AAACGTAGTAAAAAGTATAGAAAATAGCTATAAAAACATGCATAAT
196 AAAAGTAGTAAAAAGTATAGAAAATAGCTATAAAAACATGCATAAT
52539 T
1 T
52540 TGAGCTCGAT
Statistics
Matches: 233, Mismatches: 9, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
241 27 0.12
242 206 0.88
ACGTcount: A:0.44, C:0.17, G:0.11, T:0.28
Consensus pattern (241 bp):
TAGTTTTCAAATCTTCAAATATCTTCAATCACGAACTCCGCATCTTCAAATCTTCATTCCAGATG
GCTAAGTCCATAGTTGAGTAAAAAGTCACTAAAATAGCTCCAAAAAGAGTGAAAAACAATAAGTT
TTCACTTTTCCTGTCTTCAAGACCTAAAAACACAAATACTAACAAAATAGGGTAAAAACACATAT
AAAAGTAGTAAAAAGTATAGAAAATAGCTATAAAAACATGCATAAT
Found at i:58414 original size:188 final size:188
Alignment explanation
Indices: 58097--58471 Score: 714
Period size: 188 Copynumber: 2.0 Consensus size: 188
58087 CATTGTTGGC
*
58097 ACTAAAATACCTTATCTACAATAACTTGTAGCTTGTGCTTTTATCTTGATGTGTTGAACTAAGTT
1 ACTAAAATACCTTATCTACAATAACTTGTAGCTTCTGCTTTTATCTTGATGTGTTGAACTAAGTT
*
58162 TTCCTCAATCTCTCTTGACTTGAGCTTTCCATAAGGGCTTTGATCGTAGTATGCTTCCTCTATGC
66 TTCCTCAATCTCTCTTGACTTGAGCTTTCCATAAGGGCTTTGATCATAGTATGCTTCCTCTATGC
58227 TAATGAGTTTCGTGTGGATTGGTTTAGCCATAACCGTACATTAAGTATACTACTCAAA
131 TAATGAGTTTCGTGTGGATTGGTTTAGCCATAACCGTACATTAAGTATACTACTCAAA
58285 ACTAAAATACCTTATCTACAATAACTTGTAGCTTCTGCTTTTATCTTGATGTGTTGAACTAAGTT
1 ACTAAAATACCTTATCTACAATAACTTGTAGCTTCTGCTTTTATCTTGATGTGTTGAACTAAGTT
*
58350 TTCCTCAATCTCTCTTGGCTTGAGCTTTCCATAAGGGCTTTGATCATAGTATGCTTCCTCTATGC
66 TTCCTCAATCTCTCTTGACTTGAGCTTTCCATAAGGGCTTTGATCATAGTATGCTTCCTCTATGC
*
58415 TAATGAGTTTCGTGTGGATTGGTTTGGCCATAACCGTACATTAAGTATACTACTCAA
131 TAATGAGTTTCGTGTGGATTGGTTTAGCCATAACCGTACATTAAGTATACTACTCAA
58472 TTAAACACTG
Statistics
Matches: 183, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
188 183 1.00
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (188 bp):
ACTAAAATACCTTATCTACAATAACTTGTAGCTTCTGCTTTTATCTTGATGTGTTGAACTAAGTT
TTCCTCAATCTCTCTTGACTTGAGCTTTCCATAAGGGCTTTGATCATAGTATGCTTCCTCTATGC
TAATGAGTTTCGTGTGGATTGGTTTAGCCATAACCGTACATTAAGTATACTACTCAAA
Found at i:60851 original size:17 final size:17
Alignment explanation
Indices: 60825--60870 Score: 83
Period size: 17 Copynumber: 2.7 Consensus size: 17
60815 ATGGTCCTGG
60825 TCGCGCGCGACCCGCGA
1 TCGCGCGCGACCCGCGA
*
60842 TCGTGCGCGACCCGCGA
1 TCGCGCGCGACCCGCGA
60859 TCGCGCGCGACC
1 TCGCGCGCGACC
60871 TGAACCATGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.11, C:0.46, G:0.35, T:0.09
Consensus pattern (17 bp):
TCGCGCGCGACCCGCGA
Found at i:60973 original size:68 final size:68
Alignment explanation
Indices: 60859--60991 Score: 151
Period size: 68 Copynumber: 2.0 Consensus size: 68
60849 CGACCCGCGA
* * * *
60859 TCGCGCGCGACCTGAACCATGGCAGGCCGCGATACGGGCGCGACCCA-CCATGGATCGGGTCGCG
1 TCGCGCGCGACCCGAACCATGGCAGGCCGCGACACGGGCGCAACCCAGCCATGG-CCGGGTCGCG
60923 AGGG
65 AGGG
* * ** * * *
60927 TCGCGCGTGACCCGGACCATGGTGGGCCGCGACCCGTGCGCAACCCAGCCGTGGCCGGGTCGCGA
1 TCGCGCGCGACCCGAACCATGGCAGGCCGCGACACGGGCGCAACCCAGCCATGGCCGGGTCGCGA
60992 CCCGATCGCG
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
68 48 0.91
69 5 0.09
ACGTcount: A:0.15, C:0.36, G:0.38, T:0.11
Consensus pattern (68 bp):
TCGCGCGCGACCCGAACCATGGCAGGCCGCGACACGGGCGCAACCCAGCCATGGCCGGGTCGCGA
GGG
Found at i:61632 original size:19 final size:20
Alignment explanation
Indices: 61604--61650 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
61594 TTATTTTTTC
* *
61604 TTTTCTTTCTTC-TTCTTTA
1 TTTTCCTTCTTCTTTCTCTA
61623 TTTTCCTTC-TCTTTCTCTA
1 TTTTCCTTCTTCTTTCTCTA
61642 TTTT-CTTCT
1 TTTTCCTTCT
61651 GTTTTCTCAC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
18 6 0.25
19 18 0.75
ACGTcount: A:0.04, C:0.26, G:0.00, T:0.70
Consensus pattern (20 bp):
TTTTCCTTCTTCTTTCTCTA
Found at i:62899 original size:4 final size:4
Alignment explanation
Indices: 62892--62930 Score: 69
Period size: 4 Copynumber: 9.8 Consensus size: 4
62882 TATATATATA
*
62892 TATG TATG CATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
62931 ATATACACAC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.26, C:0.03, G:0.23, T:0.49
Consensus pattern (4 bp):
TATG
Found at i:63097 original size:15 final size:16
Alignment explanation
Indices: 63079--63116 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
63069 ATATCATCAT
63079 AATATATCC-TTAAAA
1 AATATATCCTTTAAAA
*
63094 AATAAATCCTTTAAAA
1 AATATATCCTTTAAAA
63110 AATATAT
1 AATATAT
63117 TTTTAATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.55, C:0.11, G:0.00, T:0.34
Consensus pattern (16 bp):
AATATATCCTTTAAAA
Found at i:63771 original size:4 final size:4
Alignment explanation
Indices: 63762--63800 Score: 60
Period size: 4 Copynumber: 9.8 Consensus size: 4
63752 TTGGGTAGAA
* *
63762 TATG TATG TATG CATG TATG TATG TATG TATA TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
63801 ATGTTAACAG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.28, C:0.03, G:0.21, T:0.49
Consensus pattern (4 bp):
TATG
Found at i:64043 original size:22 final size:22
Alignment explanation
Indices: 64018--64063 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
64008 CCCGTTTGTA
64018 TTTGTTAAAATTTTTTGATATG
1 TTTGTTAAAATTTTTTGATATG
* *
64040 TTTGTTCATATTTTTTGATATG
1 TTTGTTAAAATTTTTTGATATG
64062 TT
1 TT
64064 CGTTCGTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.22, C:0.02, G:0.13, T:0.63
Consensus pattern (22 bp):
TTTGTTAAAATTTTTTGATATG
Found at i:64068 original size:22 final size:22
Alignment explanation
Indices: 64027--64068 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
64017 ATTTGTTAAA
*
64027 ATTTTTTGATATGTTTGTTCAT
1 ATTTTTTGATATGTTCGTTCAT
64049 ATTTTTTGATATGTTCGTTC
1 ATTTTTTGATATGTTCGTTC
64069 GTGAACAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.17, C:0.07, G:0.14, T:0.62
Consensus pattern (22 bp):
ATTTTTTGATATGTTCGTTCAT
Found at i:64662 original size:2 final size:2
Alignment explanation
Indices: 64639--64704 Score: 82
Period size: 2 Copynumber: 33.5 Consensus size: 2
64629 TTCCATTTGC
* * *
64639 AT AT AT AA AT A- AT AT -T AA AT AT AT AT AA AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
64679 AT AT AT AT AT AT AT AT GAT AT AT AT A
1 AT AT AT AT AT AT AT AT -AT AT AT AT A
64705 AGACCGTAAC
Statistics
Matches: 55, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
1 2 0.04
2 51 0.93
3 2 0.04
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.44
Consensus pattern (2 bp):
AT
Found at i:65255 original size:2 final size:2
Alignment explanation
Indices: 65248--65274 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
65238 AGAATTTAAT
65248 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
65275 CATCTGTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:68428 original size:28 final size:27
Alignment explanation
Indices: 68395--68450 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
68385 TAAAAATTAT
* *
68395 TATTTTAAAATTTAAATTATTTTAAAAA
1 TATTTTAAAA-TTAAAATATTATAAAAA
* *
68423 TATTTTTATATTAAAATATTATAAAAA
1 TATTTTAAAATTAAAATATTATAAAAA
68450 T
1 T
68451 CCTATTTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 16 0.67
28 8 0.33
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (27 bp):
TATTTTAAAATTAAAATATTATAAAAA
Found at i:72163 original size:19 final size:18
Alignment explanation
Indices: 72126--72165 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
72116 TTCTTGAAAT
*
72126 AATTCTTCAATGGTCTTC
1 AATTCTTCAATGATCTTC
*
72144 AATTCTTCAAATTATCTTC
1 AATTCTTC-AATGATCTTC
72163 AAT
1 AAT
72166 AAATCTTCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.30, C:0.20, G:0.05, T:0.45
Consensus pattern (18 bp):
AATTCTTCAATGATCTTC
Found at i:73433 original size:11 final size:11
Alignment explanation
Indices: 73399--73433 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
73389 ATTTTTGAAA
*
73399 ATTTTTTATGC
1 ATTTTCTATGC
*
73410 AATTTCTATGC
1 ATTTTCTATGC
73421 ATTTTCTATGC
1 ATTTTCTATGC
73432 AT
1 AT
73434 GTAGACTCTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.23, C:0.14, G:0.09, T:0.54
Consensus pattern (11 bp):
ATTTTCTATGC
Found at i:79206 original size:19 final size:18
Alignment explanation
Indices: 79169--79208 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
79159 TTCTTGAAAT
*
79169 AATTCTTCAATGGTCTTC
1 AATTCTTCAATGATCTTC
*
79187 AATTCTTCAAATTATCTTC
1 AATTCTTC-AATGATCTTC
79206 AAT
1 AAT
79209 AAATCTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.30, C:0.20, G:0.05, T:0.45
Consensus pattern (18 bp):
AATTCTTCAATGATCTTC
Found at i:79670 original size:22 final size:22
Alignment explanation
Indices: 79626--79671 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
79616 CTAAAATGCA
* * * *
79626 GGACAAGTTCTGCCCAGGGCTT
1 GGACAACTCCTGCCCAAGACTT
79648 GGACAACTCCTGCCCAAGACTT
1 GGACAACTCCTGCCCAAGACTT
79670 GG
1 GG
79672 TCTGTTGAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (22 bp):
GGACAACTCCTGCCCAAGACTT
Found at i:82406 original size:23 final size:24
Alignment explanation
Indices: 82361--82407 Score: 69
Period size: 26 Copynumber: 1.9 Consensus size: 24
82351 ATGGCCATAT
82361 GACAACAAAGTACAACATGATGAGGA
1 GACAACAAAGTACAACA--ATGAGGA
82387 GACAACAAAGTACAAC-ATGAG
1 GACAACAAAGTACAACAATGAG
82408 AGATGATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 5 0.24
26 16 0.76
ACGTcount: A:0.51, C:0.17, G:0.21, T:0.11
Consensus pattern (24 bp):
GACAACAAAGTACAACAATGAGGA
Found at i:84657 original size:22 final size:22
Alignment explanation
Indices: 84623--84667 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
84613 CTAAAATGCA
* *
84623 GGACAAGTTCTGCCCAGGACTT
1 GGACAACTGCTGCCCAGGACTT
84645 GGACAACTGCTGCCCAGGACTT
1 GGACAACTGCTGCCCAGGACTT
84667 G
1 G
84668 TTCTGTTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (22 bp):
GGACAACTGCTGCCCAGGACTT
Found at i:85689 original size:41 final size:41
Alignment explanation
Indices: 85644--85763 Score: 213
Period size: 41 Copynumber: 2.9 Consensus size: 41
85634 AATCTTTAAC
* * *
85644 AATTCAAGTGGTATAGTTGACAACTAGAATGGAGAAATCAA
1 AATTCAAGTGGTAGAGTTAACGACTAGAATGGAGAAATCAA
85685 AATTCAAGTGGTAGAGTTAACGACTAGAATGGAGAAATCAA
1 AATTCAAGTGGTAGAGTTAACGACTAGAATGGAGAAATCAA
85726 AATTCAAGTGGTAGAGTTAACGACTAGAATGGAGAAAT
1 AATTCAAGTGGTAGAGTTAACGACTAGAATGGAGAAAT
85764 TGAATGAATT
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 76 1.00
ACGTcount: A:0.43, C:0.09, G:0.24, T:0.23
Consensus pattern (41 bp):
AATTCAAGTGGTAGAGTTAACGACTAGAATGGAGAAATCAA
Found at i:93787 original size:29 final size:29
Alignment explanation
Indices: 93745--93802 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
93735 GAGCGGGTCT
93745 CCAGGTTGTCTCATTAACCAACTCAGCAG
1 CCAGGTTGTCTCATTAACCAACTCAGCAG
* *
93774 CCAGGTTGTCTCATTAGCCAATTCAGCAG
1 CCAGGTTGTCTCATTAACCAACTCAGCAG
93803 TCAAAATCGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (29 bp):
CCAGGTTGTCTCATTAACCAACTCAGCAG
Found at i:95436 original size:38 final size:40
Alignment explanation
Indices: 95391--95483 Score: 136
Period size: 38 Copynumber: 2.4 Consensus size: 40
95381 TAAACCGACA
*
95391 CAAAGTCTTAATTCAGGGTAATTAAGAGAA-C-ACACAGT
1 CAAAGTCTTAATTCAGGGTAATTAAGAAAAGCAACACAGT
*
95429 CAGAGTCTTAATTCAGGGTAATTAAGAAAAGCAAACACAGT
1 CAAAGTCTTAATTCAGGGTAATTAAGAAAAGC-AACACAGT
*
95470 TAAAGTCTTAATTC
1 CAAAGTCTTAATTC
95484 GAGTAGTCTC
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
38 28 0.58
39 1 0.02
41 19 0.40
ACGTcount: A:0.42, C:0.15, G:0.17, T:0.26
Consensus pattern (40 bp):
CAAAGTCTTAATTCAGGGTAATTAAGAAAAGCAACACAGT
Found at i:98285 original size:22 final size:22
Alignment explanation
Indices: 98260--98314 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
98250 AGTACACATG
98260 AGAAACAAAGATGGAATAAGGA
1 AGAAACAAAGATGGAATAAGGA
98282 AGAAACAAAGATGGAATAAGGA
1 AGAAACAAAGATGGAATAAGGA
*
98304 AGAGACAAAGA
1 AGAAACAAAGA
98315 AGGTAAGCAG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.60, C:0.05, G:0.27, T:0.07
Consensus pattern (22 bp):
AGAAACAAAGATGGAATAAGGA
Found at i:100053 original size:26 final size:27
Alignment explanation
Indices: 100024--100131 Score: 105
Period size: 26 Copynumber: 4.1 Consensus size: 27
100014 ATTGGTAACC
* * *
100024 AGTAATCATTAAAAAGAGTTAG-AAAT
1 AGTAATCAGTAAAAAGAGTAAGAAAAG
* *
100050 AGTATTCAGAAAAAAGAGTAAGAAAAG
1 AGTAATCAGTAAAAAGAGTAAGAAAAG
* * **
100077 AGTCATCAGTAAAAAGAGTAGGAAACC
1 AGTAATCAGTAAAAAGAGTAAGAAAAG
100104 A-T-ATCCAGTAAAAAGAGTAAGAAAAG
1 AGTAAT-CAGTAAAAAGAGTAAGAAAAG
100130 AG
1 AG
100132 CAATAATAAT
Statistics
Matches: 65, Mismatches: 14, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
25 2 0.03
26 38 0.58
27 25 0.38
ACGTcount: A:0.55, C:0.07, G:0.20, T:0.18
Consensus pattern (27 bp):
AGTAATCAGTAAAAAGAGTAAGAAAAG
Found at i:100232 original size:15 final size:15
Alignment explanation
Indices: 100207--100284 Score: 75
Period size: 15 Copynumber: 4.9 Consensus size: 15
100197 AAAGGCAATC
*
100207 AGTAAAGAGTAAAAT
1 AGTAAAAAGTAAAAT
*
100222 GGTAAAAAGTAATGGTAAT
1 AGTAAAAAGTAA----AAT
100241 CAGTAAAAAGTAAAAT
1 -AGTAAAAAGTAAAAT
* *
100257 ATTAAACAGTAAAAT
1 AGTAAAAAGTAAAAT
100272 AGTAAAAAGTAAA
1 AGTAAAAAGTAAA
100285 GAGTAATCAG
Statistics
Matches: 51, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
15 34 0.67
16 3 0.06
19 3 0.06
20 11 0.22
ACGTcount: A:0.59, C:0.03, G:0.17, T:0.22
Consensus pattern (15 bp):
AGTAAAAAGTAAAAT
Found at i:100252 original size:7 final size:7
Alignment explanation
Indices: 100242--100290 Score: 53
Period size: 7 Copynumber: 6.7 Consensus size: 7
100232 AATGGTAATC
100242 AGTAAAA
1 AGTAAAA
100249 AGTAAAA
1 AGTAAAA
* *
100256 TATTAAAC
1 -AGTAAAA
100264 AGTAAAA
1 AGTAAAA
100271 TAGTAAAA
1 -AGTAAAA
*
100279 AGTAAAG
1 AGTAAAA
100286 AGTAA
1 AGTAA
100291 TCAGTAAAAG
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
7 23 0.66
8 12 0.34
ACGTcount: A:0.63, C:0.02, G:0.14, T:0.20
Consensus pattern (7 bp):
AGTAAAA
Found at i:100267 original size:57 final size:57
Alignment explanation
Indices: 100175--100291 Score: 130
Period size: 57 Copynumber: 2.1 Consensus size: 57
100165 TAAGAAGTCA
* * * *
100175 AATGGTAATCAGTAAAATGTTAAAAGGCAATCAGT-AAAGAGTAAAATGGTAAAAAGT
1 AATGGTAATCAGTAAAAAGTTAAAAAGCAAACAGTAAAAGAGTAAAA-AGTAAAAAGT
** * *
100232 AATGGTAATCAGTAAAAAG-TAAAATATTAAACAGTAAAATAGTAAAAAGTAAAGAGT
1 AATGGTAATCAGTAAAAAGTTAAAA-AGCAAACAGTAAAAGAGTAAAAAGTAAAAAGT
100289 AAT
1 AAT
100292 CAGTAAAAGA
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
56 5 0.10
57 35 0.70
58 10 0.20
ACGTcount: A:0.55, C:0.04, G:0.18, T:0.23
Consensus pattern (57 bp):
AATGGTAATCAGTAAAAAGTTAAAAAGCAAACAGTAAAAGAGTAAAAAGTAAAAAGT
Found at i:100284 original size:22 final size:22
Alignment explanation
Indices: 100223--100299 Score: 70
Period size: 22 Copynumber: 3.6 Consensus size: 22
100213 GAGTAAAATG
* *
100223 GTAAAAAGT--AATGGTAATCA
1 GTAAAAAGTAAAATAGTAAACA
*
100243 GTAAAAAGTAAAATATTAAACA
1 GTAAAAAGTAAAATAGTAAACA
*
100265 GTAAAATAGTAAAA-AGTAAAGA
1 GTAAAA-AGTAAAATAGTAAACA
**
100287 GTAATCAGTAAAA
1 GTAAAAAGTAAAA
100300 GAAAAGTGGT
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
20 9 0.19
21 7 0.15
22 24 0.51
23 7 0.15
ACGTcount: A:0.58, C:0.04, G:0.16, T:0.22
Consensus pattern (22 bp):
GTAAAAAGTAAAATAGTAAACA
Found at i:100300 original size:15 final size:15
Alignment explanation
Indices: 100242--100301 Score: 59
Period size: 15 Copynumber: 4.1 Consensus size: 15
100232 AATGGTAATC
* *
100242 AGTAAAAAGTAAAAT
1 AGTAAACAGTAAAAG
* *
100257 ATTAAACAGTAAAAT
1 AGTAAACAGTAAAAG
*
100272 AGTAAAAAGT-AAAG
1 AGTAAACAGTAAAAG
*
100286 AGTAATCAGTAAAAG
1 AGTAAACAGTAAAAG
100301 A
1 A
100302 AAAGTGGTAA
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
14 11 0.30
15 26 0.70
ACGTcount: A:0.62, C:0.03, G:0.15, T:0.20
Consensus pattern (15 bp):
AGTAAACAGTAAAAG
Found at i:100300 original size:50 final size:49
Alignment explanation
Indices: 100209--100304 Score: 140
Period size: 50 Copynumber: 1.9 Consensus size: 49
100199 AGGCAATCAG
* * *
100209 TAAAGAGTAAAATGGTAAAAAGTAATGGTAATCAGTAAAAAGTAAAATAT
1 TAAACAGTAAAATAGTAAAAAGTAAAGGTAATCAGTAAAAAG-AAAATAT
100259 TAAACAGTAAAATAGTAAAAAGTAAAGAGTAATCAGT-AAAAGAAAA
1 TAAACAGTAAAATAGTAAAAAGTAAAG-GTAATCAGTAAAAAGAAAA
100305 GTGGTAAAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
49 4 0.10
50 29 0.69
51 9 0.21
ACGTcount: A:0.59, C:0.03, G:0.17, T:0.21
Consensus pattern (49 bp):
TAAACAGTAAAATAGTAAAAAGTAAAGGTAATCAGTAAAAAGAAAATAT
Found at i:100320 original size:35 final size:34
Alignment explanation
Indices: 100267--100343 Score: 109
Period size: 35 Copynumber: 2.2 Consensus size: 34
100257 ATTAAACAGT
* * *
100267 AAAATAGTAAAAAGTAAAGAGTAATCAGTAAAAGA
1 AAAATGGTAAAAAATAAAGAATAATCAGT-AAAGA
*
100302 AAAGTGGTAAAAAATAAAGAATAATCAGTAAAGA
1 AAAATGGTAAAAAATAAAGAATAATCAGTAAAGA
100336 AAAATGGT
1 AAAATGGT
100344 GAAGAGTAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
34 12 0.32
35 25 0.68
ACGTcount: A:0.61, C:0.03, G:0.18, T:0.18
Consensus pattern (34 bp):
AAAATGGTAAAAAATAAAGAATAATCAGTAAAGA
Found at i:100335 original size:14 final size:14
Alignment explanation
Indices: 100316--100367 Score: 52
Period size: 14 Copynumber: 3.8 Consensus size: 14
100306 TGGTAAAAAA
100316 TAAAGAATAATCAG
1 TAAAGAATAATCAG
* *
100330 TAAAGAAAAAT-GG
1 TAAAGAATAATCAG
* *
100343 TGAAGAGTAATCAG
1 TAAAGAATAATCAG
*
100357 TAAAGAGTAAT
1 TAAAGAATAAT
100368 GGTAATTAGT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
13 9 0.30
14 21 0.70
ACGTcount: A:0.54, C:0.04, G:0.21, T:0.21
Consensus pattern (14 bp):
TAAAGAATAATCAG
Found at i:100393 original size:22 final size:22
Alignment explanation
Indices: 100349--100527 Score: 148
Period size: 22 Copynumber: 8.2 Consensus size: 22
100339 ATGGTGAAGA
100349 GTAATCAGTAAAGAGT--AATG
1 GTAATCAGTAAAGAGTAAAATG
*
100369 GTAATTAGTAAAGAGTAAAATG
1 GTAATCAGTAAAGAGTAAAATG
100391 GTAATCAGTGAAA-AGTAAAA-G
1 GTAATCAGT-AAAGAGTAAAATG
*
100412 AGTAATCGGTAAAGA--AAAATGGTGAAG
1 -GTAATCAGTAAAGAGTAAAA---T---G
*
100439 AGTAATCAGTAAAGA--AAAATA
1 -GTAATCAGTAAAGAGTAAAATG
100460 GTAATCAGTAAAGAGTAAAATG
1 GTAATCAGTAAAGAGTAAAATG
100482 GTAATCAGTGAAA-AGTAAAA-G
1 GTAATCAGT-AAAGAGTAAAATG
100503 AGTAATCAGTAAAGA--AAAATG
1 -GTAATCAGTAAAGAGTAAAATG
100524 GTAA
1 GTAA
100528 AGAGTGATCA
Statistics
Matches: 135, Mismatches: 6, Indels: 36
0.76 0.03 0.20
Matches are distributed among these distances:
20 41 0.30
21 9 0.07
22 59 0.44
23 6 0.04
24 1 0.01
27 19 0.14
ACGTcount: A:0.52, C:0.04, G:0.23, T:0.21
Consensus pattern (22 bp):
GTAATCAGTAAAGAGTAAAATG
Found at i:100412 original size:91 final size:91
Alignment explanation
Indices: 100317--100566 Score: 383
Period size: 91 Copynumber: 2.7 Consensus size: 91
100307 GGTAAAAAAT
*
100317 AAAGAATAATCAGTAAAGAAAAATGGTGAAGAGTAATCAGTAAAGAGTAATGGTAATTAGTAAAG
1 AAAGAGTAATCAGTAAAGAAAAATGGTGAAGAGTAATCAGTAAAGAGTAATGGTAATTAGTAAAG
100382 AGTAAAATGGTAATCAGTGAAAAGTA
66 AGTAAAATGGTAATCAGTGAAAAGTA
* ** * *
100408 AAAGAGTAATCGGTAAAGAAAAATGGTGAAGAGTAATCAGTAAAGAAAAATAGTAATCAGTAAAG
1 AAAGAGTAATCAGTAAAGAAAAATGGTGAAGAGTAATCAGTAAAGAGTAATGGTAATTAGTAAAG
100473 AGTAAAATGGTAATCAGTGAAAAGTA
66 AGTAAAATGGTAATCAGTGAAAAGTA
* * * * * *
100499 AAAGAGTAATCAGTAAAGAAAAATGGTAAAGAGTGATCAATAAAGAGTAAAGATTATTCAGTAAA
1 AAAGAGTAATCAGTAAAGAAAAATGGTGAAGAGTAATCAGTAAAGAGTAATGGTAATT-AGTAAA
100564 GAG
65 GAG
100567 CAATCAGTAA
Statistics
Matches: 141, Mismatches: 17, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
91 132 0.94
92 9 0.06
ACGTcount: A:0.52, C:0.04, G:0.23, T:0.21
Consensus pattern (91 bp):
AAAGAGTAATCAGTAAAGAAAAATGGTGAAGAGTAATCAGTAAAGAGTAATGGTAATTAGTAAAG
AGTAAAATGGTAATCAGTGAAAAGTA
Found at i:100469 original size:27 final size:27
Alignment explanation
Indices: 100412--100470 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
100402 AAAGTAAAAG
* * *
100412 AGTAATCGGTAAAGAAAAATGGTGAAG
1 AGTAATCAGTAAAGAAAAATAGTGAAC
100439 AGTAATCAGTAAAGAAAAATAGT-AATC
1 AGTAATCAGTAAAGAAAAATAGTGAA-C
100466 AGTAA
1 AGTAA
100471 AGAGTAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 2 0.07
27 26 0.93
ACGTcount: A:0.53, C:0.05, G:0.22, T:0.20
Consensus pattern (27 bp):
AGTAATCAGTAAAGAAAAATAGTGAAC
Found at i:100476 original size:27 final size:27
Alignment explanation
Indices: 100420--100478 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
100410 AGAGTAATCG
* * *
100420 GTAAAGAAAAATGGTGAAGAGTAATCA
1 GTAAAGAAAAATAGTGAACAGTAAACA
*
100447 GTAAAGAAAAATAGT-AATCAGTAAAGA
1 GTAAAGAAAAATAGTGAA-CAGTAAACA
100474 GTAAA
1 GTAAA
100479 ATGGTAATCA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 2 0.07
27 25 0.93
ACGTcount: A:0.56, C:0.03, G:0.22, T:0.19
Consensus pattern (27 bp):
GTAAAGAAAAATAGTGAACAGTAAACA
Found at i:100516 original size:14 final size:14
Alignment explanation
Indices: 100499--100661 Score: 98
Period size: 14 Copynumber: 11.4 Consensus size: 14
100489 GTGAAAAGTA
100499 AAAGAGTAATCAGT
1 AAAGAGTAATCAGT
** *
100513 AAAGAAAAAT-GGT
1 AAAGAGTAATCAGT
* *
100526 AAAGAGTGATCAAT
1 AAAGAGTAATCAGT
100540 AAAGAGTAAAGATTATTCAGT
1 AAAGAGT----A--AT-CAGT
*
100561 AAAGAGCAATCAGT
1 AAAGAGTAATCAGT
** *
100575 AAAGAAAAAT-GGT
1 AAAGAGTAATCAGT
100588 AAAGAGTAATCAGT
1 AAAGAGTAATCAGT
* *
100602 GAAGAGTAATTAGT
1 AAAGAGTAATCAGT
** *
100616 AAAGAAAAAT-GGT
1 AAAGAGTAATCAGT
**
100629 AAAGAGTAAAAAGT
1 AAAGAGTAATCAGT
100643 AAAGAGTAATCAGT
1 AAAGAGTAATCAGT
100657 AAAGA
1 AAAGA
100662 AGAAATGGTA
Statistics
Matches: 110, Mismatches: 29, Indels: 20
0.69 0.18 0.13
Matches are distributed among these distances:
13 28 0.25
14 68 0.62
15 2 0.02
17 1 0.01
20 2 0.02
21 9 0.08
ACGTcount: A:0.54, C:0.04, G:0.22, T:0.20
Consensus pattern (14 bp):
AAAGAGTAATCAGT
Found at i:100593 original size:27 final size:28
Alignment explanation
Indices: 100558--100679 Score: 108
Period size: 27 Copynumber: 4.4 Consensus size: 28
100548 AAGATTATTC
*
100558 AGTAAAGAGCAATCAGTAAAGA-AAAAT
1 AGTAAAGAGTAATCAGTAAAGAGAAAAT
* * * *
100585 GGTAAAGAGTAATCAGTGAAGAGTAATT
1 AGTAAAGAGTAATCAGTAAAGAGAAAAT
** *
100613 AGTAAAGAAAAAT-GGTAAAGAGTAAAA-
1 AGTAAAGAGTAATCAGTAAAGAG-AAAAT
100640 AGTAAAGAGTAATCAGTAAAGA-AGAAAT
1 AGTAAAGAGTAATCAGTAAAGAGA-AAAT
* *
100668 GGTAAAGGGTAA
1 AGTAAAGAGTAA
100680 AGAGTAAAAA
Statistics
Matches: 73, Mismatches: 17, Indels: 9
0.74 0.17 0.09
Matches are distributed among these distances:
26 1 0.01
27 40 0.55
28 32 0.44
ACGTcount: A:0.54, C:0.03, G:0.25, T:0.18
Consensus pattern (28 bp):
AGTAAAGAGTAATCAGTAAAGAGAAAAT
Found at i:100607 original size:41 final size:41
Alignment explanation
Indices: 100545--100728 Score: 196
Period size: 41 Copynumber: 4.5 Consensus size: 41
100535 TCAATAAAGA
* * *
100545 GTAAAGATTATTCAGTAAAGAGCAATCAGTAAAGAAAAATG
1 GTAAAGAGTAATCAGTAAAGAGTAATCAGTAAAGAAAAATG
* *
100586 GTAAAGAGTAATCAGTGAAGAGTAATTAGTAAAGAAAAATG
1 GTAAAGAGTAATCAGTAAAGAGTAATCAGTAAAGAAAAATG
**
100627 GTAAAGAGTAAAAAGTAAAGAGTAATCAGTAAAGAAGAAATG
1 GTAAAGAGTAATCAGTAAAGAGTAATCAGTAAAGAA-AAATG
* ** **
100669 GTAAAGGGTAAAGAGTAAA-A--AAAGAGTAATCA-AAAAATG
1 GTAAAGAGTAATCAGTAAAGAGTAATCAGTAA--AGAAAAATG
*
100708 GTAAAGAGTAACCAGTAAAGA
1 GTAAAGAGTAATCAGTAAAGA
100729 AAAATGGTAA
Statistics
Matches: 123, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
39 28 0.23
40 3 0.02
41 70 0.57
42 22 0.18
ACGTcount: A:0.54, C:0.04, G:0.23, T:0.18
Consensus pattern (41 bp):
GTAAAGAGTAATCAGTAAAGAGTAATCAGTAAAGAAAAATG
Found at i:100643 original size:7 final size:7
Alignment explanation
Indices: 100586--100857 Score: 87
Period size: 7 Copynumber: 40.3 Consensus size: 7
100576 AAGAAAAATG
100586 GTAAAGA
1 GTAAAGA
**
100593 GTAATCA
1 GTAAAGA
*
100600 GTGAAGA
1 GTAAAGA
**
100607 GTAATTA
1 GTAAAGA
100614 GTAAAGA
1 GTAAAGA
*
100621 -AAAATG-
1 GTAAA-GA
100627 GTAAAGA
1 GTAAAGA
*
100634 GTAAAAA
1 GTAAAGA
100641 GTAAAGA
1 GTAAAGA
**
100648 GTAATCA
1 GTAAAGA
100655 GTAAAGAA
1 GTAAAG-A
100663 G-AAATG-
1 GTAAA-GA
*
100669 GTAAAGG
1 GTAAAGA
100676 GTAAAGA
1 GTAAAGA
100683 GTAAA-A
1 GTAAAGA
100689 --AAAGA
1 GTAAAGA
**
100694 GTAATCA
1 GTAAAGA
**
100701 AAAAATG-
1 GTAAA-GA
100708 GTAAAGA
1 GTAAAGA
**
100715 GTAACCA
1 GTAAAGA
100722 GTAAAGA
1 GTAAAGA
*
100729 -AAAATG-
1 GTAAA-GA
*
100735 GTAATGA
1 GTAAAGA
100742 GTAAAGA
1 GTAAAGA
100749 GTAAA-A
1 GTAAAGA
100755 -TAAAGA
1 GTAAAGA
**
100761 GTAATCA
1 GTAAAGA
*
100768 ATAAAGA
1 GTAAAGA
*
100775 -AAAATG-
1 GTAAA-GA
100781 GTAAAGA
1 GTAAAGA
* **
100788 ATGGAGA
1 GTAAAGA
100795 GT-AAGTA
1 GTAAAG-A
100802 GTAAAGA
1 GTAAAGA
*
100809 -AAAATG-
1 GTAAA-GA
100815 GTAAAGA
1 GTAAAGA
100822 GTAAAGA
1 GTAAAGA
100829 GTAAAGAA
1 GTAAAG-A
*
100837 G-AATG-
1 GTAAAGA
100842 GTAAAGA
1 GTAAAGA
100849 GTAAAGA
1 GTAAAGA
100856 GT
1 GT
100858 TAATCAGTAA
Statistics
Matches: 186, Mismatches: 51, Indels: 56
0.63 0.17 0.19
Matches are distributed among these distances:
4 3 0.02
5 6 0.03
6 27 0.15
7 142 0.76
8 8 0.04
ACGTcount: A:0.56, C:0.02, G:0.25, T:0.18
Consensus pattern (7 bp):
GTAAAGA
Found at i:100672 original size:14 final size:13
Alignment explanation
Indices: 100558--100674 Score: 81
Period size: 14 Copynumber: 8.5 Consensus size: 13
100548 AAGATTATTC
*
100558 AGTAAAGAGCAAT
1 AGTAAAGAGAAAT
*
100571 CAGTAAAGAAAAAT
1 -AGTAAAGAGAAAT
* *
100585 GGTAAAGAGTAAT
1 AGTAAAGAGAAAT
* *
100598 CAGTGAAGAGTAATT
1 -AGTAAAGAG-AAAT
*
100613 AGTAAAGAAAAAT
1 AGTAAAGAGAAAT
* *
100626 GGTAAAGAGTAAAA
1 AGTAAAGAG-AAAT
*
100640 AGTAAAGAGTAAT
1 AGTAAAGAGAAAT
100653 CAGTAAAGAAGAAAT
1 -AGTAAAG-AGAAAT
*
100668 GGTAAAG
1 AGTAAAG
100675 GGTAAAGAGT
Statistics
Matches: 78, Mismatches: 20, Indels: 10
0.72 0.19 0.09
Matches are distributed among these distances:
13 22 0.28
14 49 0.63
15 7 0.09
ACGTcount: A:0.55, C:0.03, G:0.24, T:0.18
Consensus pattern (13 bp):
AGTAAAGAGAAAT
Found at i:100715 original size:67 final size:67
Alignment explanation
Indices: 100641--100768 Score: 213
Period size: 67 Copynumber: 1.9 Consensus size: 67
100631 AGAGTAAAAA
* *
100641 GTAAAGAGTAATCAGTAAAGAAGAAATGGTAAAGGGTAAAGAGTAAAA-AAAGAGTAATCAAAAA
1 GTAAAGAGTAACCAGTAAAGAA-AAATGGTAAAGAGTAAAGAGTAAAATAAAGAGTAATCAAAAA
100705 ATG
65 ATG
*
100708 GTAAAGAGTAACCAGTAAAGAAAAATGGTAATGAGTAAAGAGTAAAATAAAGAGTAATCAA
1 GTAAAGAGTAACCAGTAAAGAAAAATGGTAAAGAGTAAAGAGTAAAATAAAGAGTAATCAA
100769 TAAAGAAAAA
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
66 23 0.40
67 34 0.60
ACGTcount: A:0.56, C:0.04, G:0.23, T:0.17
Consensus pattern (67 bp):
GTAAAGAGTAACCAGTAAAGAAAAATGGTAAAGAGTAAAGAGTAAAATAAAGAGTAATCAAAAAA
TG
Found at i:100796 original size:46 final size:46
Alignment explanation
Indices: 100709--100798 Score: 126
Period size: 46 Copynumber: 2.0 Consensus size: 46
100699 CAAAAAATGG
* * *
100709 TAAAGAGTAACCAGTAAAGAAAAATGGTAATGAGTAAAGAGTAAAA
1 TAAAGAGTAACCAATAAAGAAAAATGGTAAAGAATAAAGAGTAAAA
* **
100755 TAAAGAGTAATCAATAAAGAAAAATGGTAAAGAATGGAGAGTAA
1 TAAAGAGTAACCAATAAAGAAAAATGGTAAAGAATAAAGAGTAA
100799 GTAGTAAAGA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.57, C:0.03, G:0.22, T:0.18
Consensus pattern (46 bp):
TAAAGAGTAACCAATAAAGAAAAATGGTAAAGAATAAAGAGTAAAA
Found at i:100853 original size:27 final size:27
Alignment explanation
Indices: 100701--100857 Score: 123
Period size: 27 Copynumber: 5.9 Consensus size: 27
100691 AGAGTAATCA
**
100701 AAAAATGGTAAAGAGTAACCAGTAAAG
1 AAAAATGGTAAAGAGTAAAGAGTAAAG
*
100728 AAAAATGGTAATGAGTAAAGAGT----
1 AAAAATGGTAAAGAGTAAAGAGTAAAG
** *
100751 -AAAA---TAAAGAGTAATCAATAAAG
1 AAAAATGGTAAAGAGTAAAGAGTAAAG
*
100774 AAAAATGGTAAAGAATGGAGAGTAAGTAGTAAAG
1 AAAAATGGTAAAG-A--G-TA--AAG-AGTAAAG
100808 AAAAATGGTAAAGAGTAAAGAGTAAAG
1 AAAAATGGTAAAGAGTAAAGAGTAAAG
*
100835 AAGAATGGTAAAGAGTAAAGAGT
1 AAAAATGGTAAAGAGTAAAGAGT
100858 TAATCAGTAA
Statistics
Matches: 102, Mismatches: 13, Indels: 30
0.70 0.09 0.21
Matches are distributed among these distances:
19 11 0.11
22 4 0.04
24 4 0.04
27 54 0.53
28 4 0.04
30 2 0.02
31 2 0.02
33 2 0.02
34 19 0.19
ACGTcount: A:0.56, C:0.02, G:0.25, T:0.17
Consensus pattern (27 bp):
AAAAATGGTAAAGAGTAAAGAGTAAAG
Found at i:112153 original size:58 final size:58
Alignment explanation
Indices: 112084--112199 Score: 223
Period size: 58 Copynumber: 2.0 Consensus size: 58
112074 TTTGATTTTT
*
112084 CTGTTTGAATATGTTTCTTATCTCTGTACTTTATCTTATGTGTTTATGTTTTGATGGA
1 CTGTTTAAATATGTTTCTTATCTCTGTACTTTATCTTATGTGTTTATGTTTTGATGGA
112142 CTGTTTAAATATGTTTCTTATCTCTGTACTTTATCTTATGTGTTTATGTTTTGATGGA
1 CTGTTTAAATATGTTTCTTATCTCTGTACTTTATCTTATGTGTTTATGTTTTGATGGA
112200 TTTGGTGGCC
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.18, C:0.10, G:0.16, T:0.55
Consensus pattern (58 bp):
CTGTTTAAATATGTTTCTTATCTCTGTACTTTATCTTATGTGTTTATGTTTTGATGGA
Found at i:114870 original size:26 final size:26
Alignment explanation
Indices: 114826--114875 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
114816 ATGATTTAGG
* *
114826 GGTTACTAACTCCCTTTTTCTTTTGA
1 GGTTACTAACACCCATTTTCTTTTGA
* *
114852 GGTTACTAACACTCATTTTTTTTT
1 GGTTACTAACACCCATTTTCTTTT
114876 CAAGAGGGAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.18, C:0.20, G:0.10, T:0.52
Consensus pattern (26 bp):
GGTTACTAACACCCATTTTCTTTTGA
Found at i:116353 original size:21 final size:22
Alignment explanation
Indices: 116329--116372 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
116319 GTAAGTGATG
116329 AAGT-AGTGAAATTGAAAATAA
1 AAGTGAGTGAAATTGAAAATAA
* *
116350 AAGTGAGTGAATTTGAGAATAA
1 AAGTGAGTGAAATTGAAAATAA
116372 A
1 A
116373 GGTAATAGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.52, C:0.00, G:0.23, T:0.25
Consensus pattern (22 bp):
AAGTGAGTGAAATTGAAAATAA
Found at i:121364 original size:33 final size:32
Alignment explanation
Indices: 121321--121397 Score: 109
Period size: 33 Copynumber: 2.3 Consensus size: 32
121311 AAGCCGCGCA
* *
121321 ACACCGGCCACGCGACTTGGAGATGCCCGGCC
1 ACACCGGCCACGCGACATGGACATGCCCGGCC
*
121353 ATCACCGGCCACGCGACATGGCCATGCCCGGCC
1 A-CACCGGCCACGCGACATGGACATGCCCGGCC
121386 ACAACCGGCCAC
1 AC-ACCGGCCAC
121398 ATGATCCTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
32 2 0.05
33 38 0.95
ACGTcount: A:0.21, C:0.44, G:0.27, T:0.08
Consensus pattern (32 bp):
ACACCGGCCACGCGACATGGACATGCCCGGCC
Found at i:122428 original size:9 final size:9
Alignment explanation
Indices: 122408--122441 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
122398 AGTTATATCG
122408 AAAAATATAA
1 AAAAATA-AA
122418 AAAAATAAA
1 AAAAATAAA
*
122427 AAAAATAAG
1 AAAAATAAA
122436 AAAAAT
1 AAAAAT
122442 TTTCGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 16 0.70
10 7 0.30
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (9 bp):
AAAAATAAA
Done.