Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013945.1 Corchorus capsularis cultivar CVL-1 contig13966, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33355

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17733--17784
26
2.0
27
92
3
88
23
19
3
53
1.61
17733--17797
28
2.4
28
89
5
98
23
20
4
52
1.65
17732--17908
54
3.4
52
75
13
161
21
24
3
50
1.63
17781--17823
19
2.3
18
84
8
50
20
25
4
48
1.69
17781--17816
19
1.9
18
88
5
54
19
27
5
47
1.72
17799--17918
27
4.4
27
72
12
93
20
25
2
50
1.61
17843--17973
65
2.0
65
88
2
192
18
25
2
54
1.55
17866--17955
37
2.4
37
80
10
103
15
24
2
57
1.49
17903--17975
27
2.7
27
85
10
105
16
23
2
57
1.52
17930--18012
38
2.2
36
83
8
96
15
25
2
56
1.51
18121--18485
20
17.1
20
70
20
142
21
20
4
53
1.63
18121--18466
130
2.7
127
92
3
579
21
20
4
53
1.63
25288--25321
14
2.4
14
95
0
59
23
11
14
50
1.76
26487--27135
48
13.5
48
86
1
881
12
26
24
36
1.91
28431--28514
35
2.4
35
82
4
107
25
20
25
29
1.99
28543--28591
6
7.7
6
95
4
71
16
0
44
38
1.48
28542--28589
7
7.3
7
95
4
75
14
0
43
41
1.45
28542--28591
14
3.8
13
89
10
84
16
0
44
40
1.47
32291--32329
19
2.1
19
85
0
51
12
7
25
53
1.65

Tables:   1

The End!