Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013949.1 Corchorus capsularis cultivar CVL-1 contig13970, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17211

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
372--428
17
3.4
17
73
7
53
70
3
19
7
1.26
2100--2158
27
2.3
26
85
5
75
8
20
1
69
1.23
5839--5960
27
4.5
27
87
5
174
43
25
14
16
1.86
5846--5958
55
2.1
55
91
3
183
43
26
14
15
1.85
6234--6414
22
8.4
22
74
8
131
52
4
20
22
1.64
6636--6660
10
2.5
10
100
0
50
68
0
20
12
1.21
6646--6714
17
3.9
17
71
17
59
56
4
21
17
1.58
6578--6660
39
2.2
37
81
10
98
59
2
24
14
1.48
6616--6687
27
2.7
26
87
8
92
58
2
22
16
1.51
6636--6724
37
2.4
36
81
9
108
58
3
22
15
1.52
6672--6769
27
3.6
27
71
9
83
53
3
23
20
1.60
6578--6746
64
2.6
64
85
3
198
55
2
23
17
1.56
6792--6857
27
2.4
27
87
5
98
53
4
19
22
1.64
8093--8159
23
2.7
24
73
17
66
44
2
1
50
1.26
10661--10720
31
1.9
31
86
6
86
45
11
21
21
1.84
11635--11680
21
2.2
21
88
3
67
32
34
17
15
1.91
14166--14576
48
8.6
48
89
1
592
39
24
23
12
1.89

Tables:   1

The End!