genome.fa.s13950.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013950.1 Corchorus capsularis cultivar CVL-1 contig13971, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53800

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6248--6287	6	6.7	6	94	0	71	82	0	2	15	0.77
10975--11241	48	5.5	48	82	4	324	41	23	21	13	1.88
10976--11247	98	2.8	97	83	3	354	42	23	21	12	1.87
10975--11247	146	1.9	145	86	3	397	42	23	21	12	1.87
11865--12002	50	2.7	51	91	3	217	35	17	4	42	1.69
15825--16681	427	2.0	427	99	0	1696	30	21	14	33	1.93
18773--18865	41	2.2	43	94	3	163	48	16	6	29	1.70
21637--21740	52	2.0	52	94	0	181	45	10	10	33	1.73
28669--28766	38	2.6	38	80	9	110	38	21	19	20	1.93
29057--29149	16	5.4	16	67	18	62	35	15	8	40	1.77
29037--29293	19	14.4	19	65	16	111	37	15	8	38	1.79
29031--29217	35	5.3	35	94	0	284	36	16	8	38	1.79
29199--29238	21	1.9	21	94	0	71	40	15	0	45	1.46
29161--29273	56	2.0	56	96	0	208	38	15	6	40	1.72
29220--29300	35	2.3	35	89	0	126	37	14	8	39	1.77
31660--31725	32	2.1	32	97	0	123	46	10	33	9	1.70
32037--32121	44	1.9	44	100	0	170	44	11	14	29	1.80
37867--37897	14	2.2	14	100	0	62	35	6	19	38	1.77
39688--40066	62	6.0	62	72	11	225	35	13	23	26	1.93
40158--40212	26	2.1	26	86	0	74	18	16	23	41	1.89
41308--41343	19	1.9	18	88	5	54	41	2	22	33	1.68
42150--42751	301	2.0	302	98	0	1161	32	13	18	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42927--42960	16	2.2	16	89	5	52	29	2	8	58	1.43
52783--52816	16	2.2	16	89	5	52	29	2	8	58	1.43

Tables:   1

The End!