Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013953.1 Corchorus capsularis cultivar CVL-1 contig13974, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51448

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--36
2
17.5
2
93
6
61
0
50
0
50
1.00
1847--1879
17
1.9
17
93
0
57
87
0
12
0
0.53
7274--7313
21
1.9
21
90
10
64
7
12
2
77
1.07
7830--8462
314
2.0
313
93
0
1079
30
17
22
28
1.97
9661--9690
2
15.0
2
100
0
60
0
0
50
50
1.00
17417--17448
2
16.0
2
100
0
64
50
0
0
50
1.00
19721--20022
152
2.0
152
94
0
532
35
20
11
32
1.89
21965--21995
2
15.5
2
100
0
62
51
0
0
48
1.00
25974--26006
15
2.1
16
88
5
50
15
9
21
54
1.68
32843--32896
25
2.1
27
89
6
85
18
11
22
48
1.79
33097--33166
31
2.2
32
85
7
90
4
14
41
40
1.65
33154--33224
6
12.5
6
76
11
69
2
21
43
32
1.67
33138--33188
22
2.3
22
93
6
86
1
15
41
41
1.58
33107--33166
16
3.8
16
93
4
104
5
13
40
41
1.66
33177--33222
17
2.7
17
100
0
92
4
21
47
26
1.69
33994--34032
16
2.4
16
91
0
60
7
17
38
35
1.79
37317--37356
21
2.0
21
90
5
64
42
2
12
42
1.56
37500--37691
50
3.8
50
74
6
158
40
8
17
33
1.80
38296--38612
50
6.4
50
86
0
402
17
27
16
38
1.91
45144--45203
30
2.0
30
87
6
86
31
16
8
43
1.78
46369--46407
14
2.8
14
88
0
60
7
25
43
23
1.80
46439--46533
32
3.0
32
81
3
93
20
7
30
42
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46677--46715
20
2.0
20
85
10
53
35
5
5
53
1.45
46778--46842
16
4.1
16
75
13
62
7
10
33
47
1.67
47158--47198
18
2.2
19
86
4
57
26
12
7
53
1.64
47487--47517
16
1.9
16
93
0
53
54
19
6
19
1.65

Tables:   1

The End!