Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013957.1 Corchorus capsularis cultivar CVL-1 contig13978, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52861

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
554--1214
356
1.9
357
97
0
1261
37
16
21
24
1.94
2257--2299
22
2.0
22
85
0
59
16
23
34
25
1.95
2855--2902
15
2.9
17
78
12
64
18
27
12
41
1.86
2855--2921
36
2.0
35
88
11
104
17
28
13
40
1.88
8647--8707
30
2.0
30
87
6
88
44
4
16
34
1.69
14830--14955
32
4.0
32
89
2
173
14
36
33
15
1.88
14944--15053
31
3.4
32
88
3
114
20
30
32
15
1.94
14944--15054
32
3.5
31
88
3
150
20
30
33
15
1.94
22310--22384
31
2.4
31
84
2
87
40
37
13
9
1.77
22310--22382
16
4.6
16
79
3
67
39
38
12
9
1.76
22666--23348
340
2.0
340
100
0
1366
37
7
11
42
1.71
24036--24068
15
2.1
17
88
11
52
36
36
18
9
1.82
29895--29919
13
1.9
13
100
0
50
32
12
16
40
1.84
36160--36189
2
15.5
2
93
6
53
50
0
0
50
1.00
36775--36806
3
10.7
3
100
0
64
34
0
0
65
0.93
37130--37160
16
1.9
16
93
0
53
35
9
0
54
1.33
37500--38200
195
3.6
197
86
4
925
36
17
13
33
1.88
38420--38563
72
2.0
72
100
0
288
45
16
8
29
1.76
38771--38875
31
3.4
31
92
2
174
5
14
38
41
1.69
38771--38875
16
6.7
16
92
3
169
5
14
38
41
1.69
38771--38875
47
2.2
47
91
3
167
5
14
38
41
1.69
38866--38909
17
2.6
17
85
0
52
6
20
45
27
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38883--38913
6
5.3
6
92
7
55
0
19
48
32
1.49
38878--38913
17
2.1
17
94
0
63
2
19
47
30
1.64
39662--39706
16
2.7
17
86
6
65
2
20
51
26
1.59
39698--39754
16
3.6
16
86
9
64
7
14
40
38
1.73
39662--39707
6
8.2
6
81
13
53
2
19
50
28
1.60
40855--40916
26
2.4
26
88
0
97
35
12
8
43
1.73
40855--40924
26
2.8
25
85
6
81
35
12
7
44
1.70
44327--44384
30
2.0
30
93
3
100
44
5
15
34
1.69
47160--47184
6
4.2
6
100
0
50
84
0
0
16
0.63
47442--47604
81
2.0
81
96
2
301
42
8
17
31
1.79
48387--48422
13
2.7
13
95
4
63
52
11
5
30
1.59
49364--49437
38
2.0
36
84
5
94
37
4
9
48
1.55
51506--51836
141
2.4
138
92
1
527
38
9
9
42
1.69
52116--52517
140
2.9
141
83
7
514
35
12
9
42
1.75

Tables:   1

The End!