genome.fa.s13959.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013959.1 Corchorus capsularis cultivar CVL-1 contig13980, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58642

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2860--2926	24	3.1	22	79	16	61	47	4	1	46	1.31
2882--2947	24	2.7	24	84	9	80	43	4	1	50	1.32
4835--4883	10	4.7	10	90	10	64	0	36	0	63	0.95
4829--4883	3	19.0	3	79	20	64	0	36	0	63	0.95
10133--10410	58	5.0	58	77	11	296	25	18	8	47	1.77
10402--10520	55	2.2	54	90	3	184	25	22	5	46	1.74
10486--10720	40	6.2	40	76	12	226	23	20	3	51	1.62
10596--10788	68	2.8	68	91	1	307	20	20	2	56	1.54
10518--10824	108	2.8	105	76	15	288	21	20	3	54	1.58
10735--10824	40	2.2	40	86	0	117	18	21	4	55	1.60
10860--11111	54	4.9	51	71	9	170	29	16	7	46	1.75
12537--12619	30	2.8	30	88	3	123	34	25	21	18	1.96
13783--13847	30	2.2	30	88	5	96	10	26	40	23	1.87
20308--20335	14	2.0	14	100	0	56	14	21	42	21	1.88
22143--22181	20	2.0	20	89	0	60	43	33	7	15	1.75
25740--25811	33	2.2	32	87	4	108	23	15	5	55	1.61
25752--25814	33	1.9	33	96	0	117	22	9	6	61	1.49
26250--26388	41	3.4	40	73	12	131	12	12	22	52	1.72
26250--26326	40	2.0	40	82	10	97	11	12	24	50	1.74
27191--27221	2	15.5	2	100	0	62	48	0	0	51	1.00
27411--27521	55	2.0	55	92	0	186	31	9	20	38	1.84
31511--31561	25	2.0	25	100	0	102	21	11	23	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31517--31572	25	2.2	25	87	6	78	21	7	25	46	1.76
31905--32066	31	5.5	31	77	13	137	17	22	27	33	1.96
31955--32057	53	1.9	53	90	0	161	16	19	27	36	1.93
32983--33029	7	6.2	8	85	14	57	61	12	0	25	1.31
35337--35373	1	37.0	1	94	0	65	97	0	0	2	0.18
37431--37479	25	1.9	24	87	8	62	16	6	10	67	1.39
38079--38118	21	1.9	21	84	0	53	32	32	17	17	1.93
39829--39887	3	19.7	3	96	0	109	66	0	1	32	1.02
45191--45215	12	2.1	12	100	0	50	32	8	16	44	1.76
45464--45516	23	2.3	23	90	6	81	9	22	47	20	1.79
45584--45633	23	2.2	23	85	0	64	10	24	42	24	1.85
48099--48168	27	2.6	27	86	0	86	34	41	8	15	1.78
48412--48529	14	8.4	14	70	18	66	53	3	2	40	1.31
48367--48527	46	3.3	46	70	20	148	54	4	3	37	1.38
48577--48632	14	4.2	13	88	4	85	67	3	0	28	1.07
48676--48781	32	3.3	32	84	2	124	13	36	37	12	1.82
48981--49020	20	2.0	20	95	0	71	27	20	5	47	1.70
53265--53300	2	18.0	2	94	0	63	47	0	0	52	1.00
55721--55750	2	15.5	2	93	6	53	50	0	0	50	1.00

Tables:   1

The End!