Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013961.1 Corchorus capsularis cultivar CVL-1 contig13982, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58582

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4787--4845
16
3.6
16
75
4
64
18
18
27
35
1.94
7422--7573
36
4.2
36
72
13
141
27
17
7
46
1.76
7392--7546
73
2.1
73
93
0
274
23
16
7
52
1.69
7566--7957
41
10.3
37
77
10
282
25
22
8
44
1.80
7566--7753
37
5.3
34
81
6
155
28
23
7
40
1.81
7550--7753
68
2.9
70
77
15
224
27
24
7
40
1.81
7673--7731
18
3.2
18
65
21
50
27
25
6
40
1.80
7655--7953
41
7.5
41
87
3
366
24
21
8
46
1.78
7655--7964
122
2.6
116
82
8
358
24
21
8
46
1.79
7655--7953
81
3.8
81
86
4
371
24
21
8
46
1.78
7949--8380
37
11.7
36
87
5
496
26
18
10
43
1.83
8378--8620
71
3.4
71
88
2
339
24
22
10
43
1.84
8544--8625
41
2.0
42
84
13
109
24
18
9
47
1.78
15291--15320
2
15.0
2
92
0
51
50
0
3
46
1.18
24010--24087
41
1.9
41
94
0
138
39
10
11
38
1.76
28066--28122
28
2.0
28
100
0
114
38
17
7
36
1.77
33133--33171
12
3.6
12
80
19
50
25
25
15
33
1.95
34980--35022
12
3.5
12
93
6
77
25
23
16
34
1.95
44527--44557
15
2.1
15
93
0
53
54
3
6
35
1.42
46947--46976
2
15.0
2
100
0
60
50
0
0
50
1.00
47210--47311
51
1.9
54
84
5
138
33
8
4
52
1.54
47560--47592
17
1.9
17
88
11
50
36
3
0
60
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48892--48944
17
3.1
17
82
15
65
18
1
16
62
1.42
49217--49275
16
3.6
16
75
13
57
45
27
11
15
1.81
49635--49691
22
2.7
21
71
15
53
36
7
0
56
1.27
50496--50553
16
3.6
16
80
0
71
27
34
24
13
1.93
50470--50553
32
2.6
32
76
0
87
30
32
22
14
1.94

Tables:   1

The End!