Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01013963.1 Corchorus capsularis cultivar CVL-1 contig13984, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 91528
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:3280 original size:20 final size:20
Alignment explanation
Indices: 3255--3293 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
3245 AAAAAGAGCA
*
3255 CCAATTTGCAAATCAAATGT
1 CCAATTCGCAAATCAAATGT
*
3275 CCAATTCGTAAATCAAATG
1 CCAATTCGCAAATCAAATG
3294 CCTTGTATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.28
Consensus pattern (20 bp):
CCAATTCGCAAATCAAATGT
Found at i:3857 original size:27 final size:26
Alignment explanation
Indices: 3789--3860 Score: 101
Period size: 27 Copynumber: 2.7 Consensus size: 26
3779 AAGTAAACTT
*
3789 AAAATGACCAAAATACCCCTAAATGCA
1 AAAATGACCAAAATGCCCCTAAATG-A
3816 AAAATGACCAAAATGCCCCTGAACATG-
1 AAAATGACCAAAATGCCCCT-AA-ATGA
3843 AAAATGACCAAAATGCCC
1 AAAATGACCAAAATGCCC
3861 TTATGTGACC
Statistics
Matches: 42, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
27 37 0.88
28 2 0.05
29 3 0.07
ACGTcount: A:0.49, C:0.26, G:0.11, T:0.14
Consensus pattern (26 bp):
AAAATGACCAAAATGCCCCTAAATGA
Found at i:5492 original size:18 final size:18
Alignment explanation
Indices: 5469--5503 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
5459 CAATTGCTGG
5469 TTTAATATTTAATATATT
1 TTTAATATTTAATATATT
* *
5487 TTTAATTTTTTATATAT
1 TTTAATATTTAATATAT
5504 ATTATACATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTAATATTTAATATATT
Found at i:6289 original size:62 final size:62
Alignment explanation
Indices: 6186--6388 Score: 248
Period size: 62 Copynumber: 3.3 Consensus size: 62
6176 GATGTTGAAT
* * * *
6186 CTGAAGGAGACTAGTCCGTGGTC-CATATTGATACTTGGAAAGAGTCCAATCCGCGGTCGAAA
1 CTGAAGGAGACCAGTCCGTGG-CAGATATTGATACTTAGAAAGAGACCAATCCGCGGTCGAAA
* * * * * *
6248 CTGAAGGAGATCAGTTCGTGGCAGATATTGATGCTTAGAAAGAGACTAATCCGTGGTCAAAA
1 CTGAAGGAGACCAGTCCGTGGCAGATATTGATACTTAGAAAGAGACCAATCCGCGGTCGAAA
* * * *
6310 CCGAAGGAGACCAATCCGTGGCCGATATTGATTCTTAGAAAGAGACCAATCC-CTGGTCGAAA
1 CTGAAGGAGACCAGTCCGTGGCAGATATTGATACTTAGAAAGAGACCAATCCGC-GGTCGAAA
6372 CTGAAGGAGACCAGTCC
1 CTGAAGGAGACCAGTCC
6389 ATGGTCAGCT
Statistics
Matches: 118, Mismatches: 21, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
61 1 0.01
62 117 0.99
ACGTcount: A:0.32, C:0.21, G:0.27, T:0.21
Consensus pattern (62 bp):
CTGAAGGAGACCAGTCCGTGGCAGATATTGATACTTAGAAAGAGACCAATCCGCGGTCGAAA
Found at i:6513 original size:37 final size:37
Alignment explanation
Indices: 6389--6505 Score: 112
Period size: 35 Copynumber: 3.2 Consensus size: 37
6379 AGACCAGTCC
* * * *
6389 ATGGTCAGCTGTTGACATTTTGAGAATGAGACCAATCT
1 ATGGTCAACTGTTGATA-TTTGAGAAAGAAACCAATCT
* * * * *
6427 GTGGTCAACTGTTGAT-CTTGAG-AAGAAACGAGTCC
1 ATGGTCAACTGTTGATATTTGAGAAAGAAACCAATCT
*
6462 ATGATCAACTGTTGATATTTGAGAAAGAAACCAATCT
1 ATGGTCAACTGTTGATATTTGAGAAAGAAACCAATCT
*
6499 TTGGTCA
1 ATGGTCA
6506 GTTGTTGAAA
Statistics
Matches: 60, Mismatches: 17, Indels: 5
0.73 0.21 0.06
Matches are distributed among these distances:
35 22 0.37
36 10 0.17
37 15 0.25
38 13 0.22
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (37 bp):
ATGGTCAACTGTTGATATTTGAGAAAGAAACCAATCT
Found at i:7776 original size:16 final size:16
Alignment explanation
Indices: 7755--7785 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7745 AAGTGTCAGG
*
7755 ATAAAAATTATTAAAT
1 ATAAAAAATATTAAAT
7771 ATAAAAAATATTAAA
1 ATAAAAAATATTAAA
7786 GCAAAACTGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
ATAAAAAATATTAAAT
Found at i:19878 original size:7 final size:6
Alignment explanation
Indices: 19857--19973 Score: 71
Period size: 6 Copynumber: 18.3 Consensus size: 6
19847 AAAAATCACC
* *
19857 TTTCTT TTTCTT TTTCTGT TTTCTT ATCTTC-T TTTCTCT CTCCGTT TCTTC-T
1 TTTCTT TTTCTT TTTCT-T TTTCTT -T-TTCTT TTTCT-T TTTC-TT T-TTCTT
*
19909 TTTCTT TTTCTT TTTCTTT TTTCTT ATCTTC-T TTTCTT TCTCCGTT TTTC-T
1 TTTCTT TTTCTT TTTC-TT TTTCTT -T-TTCTT TTTCTT T-TTC-TT TTTCTT
*
19960 TTTCTT TCTCTT TT
1 TTTCTT TTTCTT TT
19974 CTTCTGCAAC
Statistics
Matches: 88, Mismatches: 8, Indels: 30
0.70 0.06 0.24
Matches are distributed among these distances:
5 14 0.16
6 38 0.43
7 24 0.27
8 12 0.14
ACGTcount: A:0.02, C:0.23, G:0.03, T:0.73
Consensus pattern (6 bp):
TTTCTT
Found at i:19893 original size:20 final size:18
Alignment explanation
Indices: 19857--19978 Score: 78
Period size: 19 Copynumber: 6.7 Consensus size: 18
19847 AAAAATCACC
19857 TTTCTTT-TTCTTTTTCTGT
1 TTTCTTTCTTC-TTTTCT-T
19876 TTTCTTATCTTCTTTTCTCT
1 TTTCTT-TCTTCTTTTCT-T
* *
19896 CTCCGTTTCTTCTTTTCTT
1 TTTC-TTTCTTCTTTTCTT
19915 TTTCTTT-TTC---T-TT
1 TTTCTTTCTTCTTTTCTT
19928 TTTCTTATCTTCTTTTCTT
1 TTTCTT-TCTTCTTTTCTT
*
19947 TCTCCGTTT-TTCTTTTCTT
1 T-TTC-TTTCTTCTTTTCTT
*
19966 TCTCTTTTCTTCT
1 TTTC-TTTCTTCT
19979 GCAACCGTCG
Statistics
Matches: 82, Mismatches: 9, Indels: 24
0.71 0.08 0.21
Matches are distributed among these distances:
13 8 0.10
14 2 0.02
15 3 0.04
17 3 0.04
18 8 0.10
19 27 0.33
20 24 0.29
21 7 0.09
ACGTcount: A:0.02, C:0.24, G:0.02, T:0.72
Consensus pattern (18 bp):
TTTCTTTCTTCTTTTCTT
Found at i:19914 original size:8 final size:8
Alignment explanation
Indices: 19877--19946 Score: 52
Period size: 8 Copynumber: 8.2 Consensus size: 8
19867 TTTTTCTGTT
*
19877 TTCTTATC
1 TTCTTTTC
19885 TTCTTTTC
1 TTCTTTTC
19893 TCTCTCCGTTTC
1 T-TCT---TTTC
19905 TTCTTTTC
1 TTCTTTTC
* *
19913 TTTTTCTTT
1 TTCTT-TTC
19922 TTCTTTT-
1 TTCTTTTC
*
19929 TTCTTATC
1 TTCTTTTC
19937 TTCTTTTC
1 TTCTTTTC
19945 TT
1 TT
19947 TCTCCGTTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
7 6 0.12
8 27 0.54
9 9 0.18
11 3 0.06
12 5 0.10
ACGTcount: A:0.03, C:0.24, G:0.01, T:0.71
Consensus pattern (8 bp):
TTCTTTTC
Found at i:19931 original size:52 final size:51
Alignment explanation
Indices: 19857--19973 Score: 198
Period size: 52 Copynumber: 2.3 Consensus size: 51
19847 AAAAATCACC
19857 TTTCTTTTTCTTTTTCTGTTTTCTTATCTTCTTTTCTCTCTCCGTTTCTTCT
1 TTTCTTTTTCTTTTTCTGTTTTCTTATCTTCTTTTCTCTCTCCGTTT-TTCT
* *
19909 TTTCTTTTTCTTTTTCTTTTTTCTTATCTTCTTTTCTTTCTCCGTTTTTCT
1 TTTCTTTTTCTTTTTCTGTTTTCTTATCTTCTTTTCTCTCTCCGTTTTTCT
*
19960 TTTCTTTCTCTTTT
1 TTTCTTTTTCTTTT
19974 CTTCTGCAAC
Statistics
Matches: 62, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
51 17 0.27
52 45 0.73
ACGTcount: A:0.02, C:0.23, G:0.03, T:0.73
Consensus pattern (51 bp):
TTTCTTTTTCTTTTTCTGTTTTCTTATCTTCTTTTCTCTCTCCGTTTTTCT
Found at i:19943 original size:13 final size:13
Alignment explanation
Indices: 19875--19946 Score: 58
Period size: 13 Copynumber: 5.5 Consensus size: 13
19865 TCTTTTTCTG
19875 TTTTCTTATCTTC
1 TTTTCTTATCTTC
* *
19888 TTTTC-TCTCTCC
1 TTTTCTTATCTTC
* * *
19900 GTTTCTTCTTTTC
1 TTTTCTTATCTTC
*
19913 TTTTTCTTTTTCTT-
1 -TTTTC-TTATCTTC
19927 TTTTCTTATCTTC
1 TTTTCTTATCTTC
19940 TTTTCTT
1 TTTTCTT
19947 TCTCCGTTTT
Statistics
Matches: 46, Mismatches: 9, Indels: 8
0.73 0.14 0.13
Matches are distributed among these distances:
12 15 0.33
13 22 0.48
14 4 0.09
15 5 0.11
ACGTcount: A:0.03, C:0.24, G:0.01, T:0.72
Consensus pattern (13 bp):
TTTTCTTATCTTC
Found at i:21176 original size:12 final size:11
Alignment explanation
Indices: 21136--21188 Score: 52
Period size: 13 Copynumber: 4.4 Consensus size: 11
21126 TCTTCATGGA
21136 TTTTCTTTTTCAT
1 TTTTCTTTTT--T
*
21149 TTTTCAATTTTGT
1 TTTTC--TTTTTT
21162 TTTTCTTTTCTT
1 TTTTCTTTT-TT
21174 TTTTCTTTTTT
1 TTTTCTTTTTT
21185 TTTT
1 TTTT
21189 AACTTTGGGT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
11 10 0.29
12 10 0.29
13 11 0.31
15 4 0.11
ACGTcount: A:0.06, C:0.11, G:0.02, T:0.81
Consensus pattern (11 bp):
TTTTCTTTTTT
Found at i:33153 original size:13 final size:14
Alignment explanation
Indices: 33131--33163 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
33121 ATTTATTTTG
33131 ATAAAAAAAAA-AC
1 ATAAAAAAAAAGAC
*
33144 ATAAACAAAAAGAC
1 ATAAAAAAAAAGAC
33158 ATAAAA
1 ATAAAA
33164 TGATAAAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
13 10 0.59
14 7 0.41
ACGTcount: A:0.79, C:0.09, G:0.03, T:0.09
Consensus pattern (14 bp):
ATAAAAAAAAAGAC
Found at i:38402 original size:47 final size:47
Alignment explanation
Indices: 38349--38446 Score: 144
Period size: 47 Copynumber: 2.1 Consensus size: 47
38339 ACAAATTCTA
* *
38349 ATTTACTC-AATCTAATATTTCAAATTTACTTATTTAATTTTAGTTTT
1 ATTTACTCGAA-CTAACACTTCAAATTTACTTATTTAATTTTAGTTTT
* *
38396 ATTTACTCGAACTAACGCTTCAATTTTACTTATTTAATTTTAGTTTT
1 ATTTACTCGAACTAACACTTCAAATTTACTTATTTAATTTTAGTTTT
38443 ATTT
1 ATTT
38447 GTCTCATTAA
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
47 44 0.96
48 2 0.04
ACGTcount: A:0.30, C:0.12, G:0.04, T:0.54
Consensus pattern (47 bp):
ATTTACTCGAACTAACACTTCAAATTTACTTATTTAATTTTAGTTTT
Found at i:42290 original size:26 final size:26
Alignment explanation
Indices: 42261--42356 Score: 93
Period size: 27 Copynumber: 3.6 Consensus size: 26
42251 AATTGCGGAG
* *
42261 GCTTTGGCATGAGTCCCATTGCGGGA
1 GCTTCGGCATGAGTCCCACTGCGGGA
* ** * *
42287 GCTTTGGTGTGAGTCTCAACCGCGGGA
1 GCTTCGGCATGAGTC-CCACTGCGGGA
*
42314 GCTTCAGCATGAGTCCCAACTGCGGGA
1 GCTTCGGCATGAGTCCC-ACTGCGGGA
*
42341 GCTTCGACATGAGTCC
1 GCTTCGGCATGAGTCC
42357 TTCAGCATAA
Statistics
Matches: 55, Mismatches: 13, Indels: 3
0.77 0.18 0.04
Matches are distributed among these distances:
26 14 0.25
27 41 0.75
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (26 bp):
GCTTCGGCATGAGTCCCACTGCGGGA
Found at i:42372 original size:41 final size:41
Alignment explanation
Indices: 42315--42397 Score: 114
Period size: 41 Copynumber: 2.0 Consensus size: 41
42305 ACCGCGGGAG
* *
42315 CTTCAGCATGAGTCCCAACTGCGG-GAGCTTCGACATGAGTC
1 CTTCAGCATAAGTCCCAACTACGGAG-GCTTCGACATGAGTC
* *
42356 CTTCAGCATAAGTCCCAACTACGGAGGCTTTGGCATGAGTC
1 CTTCAGCATAAGTCCCAACTACGGAGGCTTCGACATGAGTC
42397 C
1 C
42398 CAACCGTGGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
41 36 0.97
42 1 0.03
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.23
Consensus pattern (41 bp):
CTTCAGCATAAGTCCCAACTACGGAGGCTTCGACATGAGTC
Found at i:42441 original size:54 final size:54
Alignment explanation
Indices: 42357--42481 Score: 151
Period size: 54 Copynumber: 2.3 Consensus size: 54
42347 ACATGAGTCC
* * * * * *
42357 TTCAGCATAAGTCCCAACTACGGAGGCTTTGGCATGAGTCCCAACCGTGGGAGT
1 TTCAGCATGAGTGCCAAGTGCGGAGGCTTTGGCATGAGTCCCAACCGCGGGAAT
* * * *
42411 TTCAGTATGAGTGCCAAGTGCGGAGGCTTTGGCGTGAGTCTCAACTGCGGGAAT
1 TTCAGCATGAGTGCCAAGTGCGGAGGCTTTGGCATGAGTCCCAACCGCGGGAAT
*
42465 TTCAGCATTAGTGCCAA
1 TTCAGCATGAGTGCCAA
42482 CAAGAGCATC
Statistics
Matches: 59, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 59 1.00
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (54 bp):
TTCAGCATGAGTGCCAAGTGCGGAGGCTTTGGCATGAGTCCCAACCGCGGGAAT
Found at i:43268 original size:24 final size:24
Alignment explanation
Indices: 43241--43346 Score: 95
Period size: 24 Copynumber: 4.4 Consensus size: 24
43231 ACCACCAATC
* *
43241 TTAAGCACCATTTTGCCACAGAAG
1 TTAAGCACCATTCTACCACAGAAG
* *
43265 TTAATCACAATTCTACCACAGAAG
1 TTAAGCACCATTCTACCACAGAAG
* * * **
43289 TCAAGCACCATTTTGCGGCAGAAG
1 TTAAGCACCATTCTACCACAGAAG
* * *
43313 TTAATCACAATTCTACCGCAGAAG
1 TTAAGCACCATTCTACCACAGAAG
*
43337 TCAAGCACCA
1 TTAAGCACCA
43347 CTCCGCGGCA
Statistics
Matches: 62, Mismatches: 20, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
24 62 1.00
ACGTcount: A:0.36, C:0.26, G:0.15, T:0.23
Consensus pattern (24 bp):
TTAAGCACCATTCTACCACAGAAG
Found at i:43302 original size:48 final size:48
Alignment explanation
Indices: 43243--43346 Score: 181
Period size: 48 Copynumber: 2.2 Consensus size: 48
43233 CACCAATCTT
43243 AAGCACCATTTTGCCACAGAAGTTAATCACAATTCTACCACAGAAGTC
1 AAGCACCATTTTGCCACAGAAGTTAATCACAATTCTACCACAGAAGTC
** *
43291 AAGCACCATTTTGCGGCAGAAGTTAATCACAATTCTACCGCAGAAGTC
1 AAGCACCATTTTGCCACAGAAGTTAATCACAATTCTACCACAGAAGTC
43339 AAGCACCA
1 AAGCACCA
43347 CTCCGCGGCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.37, C:0.27, G:0.15, T:0.21
Consensus pattern (48 bp):
AAGCACCATTTTGCCACAGAAGTTAATCACAATTCTACCACAGAAGTC
Found at i:43355 original size:48 final size:48
Alignment explanation
Indices: 43259--43394 Score: 182
Period size: 48 Copynumber: 2.8 Consensus size: 48
43249 CATTTTGCCA
* * **
43259 CAGAAGTTAATCACAATTCTACCACAGAAGTCAAGCACCATTTTGCGG
1 CAGAAGTTAATCACAATTCTACCGCAGAAGTCAAGCACCACTCCGCGG
43307 CAGAAGTTAATCACAATTCTACCGCAGAAGTCAAGCACCACTCCGCGG
1 CAGAAGTTAATCACAATTCTACCGCAGAAGTCAAGCACCACTCCGCGG
** * * * *
43355 CAGAAGCCAACCACAATTTTACCGTAGAAGCCAAGCACCA
1 CAGAAGTTAATCACAATTCTACCGCAGAAGTCAAGCACCA
43395 TGCTGCCACA
Statistics
Matches: 78, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 78 1.00
ACGTcount: A:0.36, C:0.29, G:0.17, T:0.18
Consensus pattern (48 bp):
CAGAAGTTAATCACAATTCTACCGCAGAAGTCAAGCACCACTCCGCGG
Found at i:43357 original size:24 final size:24
Alignment explanation
Indices: 43283--43360 Score: 84
Period size: 24 Copynumber: 3.2 Consensus size: 24
43273 AATTCTACCA
*
43283 CAGAAGTCAAGCACCATTTTGCGG
1 CAGAAGTCAAGCACCATTCTGCGG
* * * * *
43307 CAGAAGTTAATCACAATTCTACCG
1 CAGAAGTCAAGCACCATTCTGCGG
* *
43331 CAGAAGTCAAGCACCACTCCGCGG
1 CAGAAGTCAAGCACCATTCTGCGG
43355 CAGAAG
1 CAGAAG
43361 CCAACCACAA
Statistics
Matches: 41, Mismatches: 13, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.33, C:0.28, G:0.22, T:0.17
Consensus pattern (24 bp):
CAGAAGTCAAGCACCATTCTGCGG
Found at i:48884 original size:16 final size:16
Alignment explanation
Indices: 48863--48894 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
48853 AAAAATAACT
48863 TTACAAAATAAAAAAA
1 TTACAAAATAAAAAAA
48879 TTACAAAATAAAAAAA
1 TTACAAAATAAAAAAA
48895 GACACGTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.75, C:0.06, G:0.00, T:0.19
Consensus pattern (16 bp):
TTACAAAATAAAAAAA
Found at i:58056 original size:2 final size:2
Alignment explanation
Indices: 58049--58078 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
58039 TGTGAGATTT
58049 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
58079 AAATATACTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:62564 original size:28 final size:29
Alignment explanation
Indices: 62495--62569 Score: 98
Period size: 30 Copynumber: 2.6 Consensus size: 29
62485 GGGTCATCCA
62495 GGGGCATTTTGGTCATTTTCACATCTAGGG
1 GGGGCATTTTGGTCATTTTCACATCTA-GG
** *
62525 GGGGCATTTTGGTCATTTTTGCATTTA-G
1 GGGGCATTTTGGTCATTTTCACATCTAGG
*
62553 GGGGTATTTTGGTCATT
1 GGGGCATTTTGGTCATT
62570 CTTAATCTAC
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 17 0.41
30 24 0.59
ACGTcount: A:0.15, C:0.12, G:0.31, T:0.43
Consensus pattern (29 bp):
GGGGCATTTTGGTCATTTTCACATCTAGG
Found at i:64322 original size:16 final size:17
Alignment explanation
Indices: 64301--64333 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
64291 ATTTTTAGAC
64301 AGTTAC-AGAGAGAGAA
1 AGTTACAAGAGAGAGAA
*
64317 AGTTACAAGAGGGAGAA
1 AGTTACAAGAGAGAGAA
64334 TGAAGATATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.33, T:0.12
Consensus pattern (17 bp):
AGTTACAAGAGAGAGAA
Found at i:66458 original size:42 final size:43
Alignment explanation
Indices: 66412--66924 Score: 155
Period size: 42 Copynumber: 12.3 Consensus size: 43
66402 AAGGGCAATC
* *
66412 AGTAAAAAGTAAAAAGGT-ATCTG-AAAGGGTAAAACGGTAATT
1 AGTAAAAAGTAAAAAGGTAATCAGTAAAGAGTAAAA-GGTAATT
* ** * * * *
66454 AGTAAAGAGTAAAGCGATAATCAGTAAAGAGTAATA-GAAATC
1 AGTAAAAAGTAAAAAGGTAATCAGTAAAGAGTAAAAGGTAATT
* * * *
66496 AGTAAGAAGT-AATA-GTAAACAGTAAAAAGTAAAAAGGTAATCT
1 AGTAAAAAGTAAAAAGGTAATCAGTAAAGAGT-AAAAGGTAAT-T
* *
66539 -GTAAAAAGTAAAAAGGT-ATCTG-AAAGGGTAAAATGGTAATT
1 AGTAAAAAGTAAAAAGGTAATCAGTAAAGAGTAAAA-GGTAATT
* *
66580 AGTAAAGAGTAATCAGTGGAAGAGTAATCAGTAAAGA--CAAA---AA-T
1 AGTAAAAAGTAA--A----AAG-GTAATCAGTAAAGAGTAAAAGGTAATT
* * * ** *
66624 -G-ATAAAG-AAAGA-GTAAT-AGT-AAGAGTAAAAAGGTAAAAT
1 AGTAAAAAGTAAAAAGGTAATCAGTAAAGAGT--AAAAGGTAATT
* *
66663 GGTAAAAAGT-AAAAGGTAATCAGTAAAGGGTAAAATGGTAATT
1 AGTAAAAAGTAAAAAGGTAATCAGTAAAGAGTAAAA-GGTAATT
* * * * * *
66706 AGTAAAAAGTAAAATGCTAATCAGT---GA--AAATGCTAGTC
1 AGTAAAAAGTAAAAAGGTAATCAGTAAAGAGTAAAAGGTAATT
* * * * *
66744 AGTAAAGAGT-AATA-GTGATCAGT-AAGAAGT-AATGGTAATC
1 AGTAAAAAGTAAAAAGGTAATCAGTAAAG-AGTAAAAGGTAATT
* * * *
66784 AGTAAGAAG--CAATGGTAATCAGTGAAA-AGTACAAAGGTAATC
1 AGTAAAAAGTAAAAAGGTAATCAGT-AAAGAGTA-AAAGGTAATT
* * * *
66826 AGTAAAAGGTAAAATA-GTAATTAGAAAAGAGTAAAATGGTAATC
1 AGTAAAAAGTAAAA-AGGTAATCAGTAAAGAGTAAAA-GGTAATT
**
66870 AGTAAAAAGT-AAAAGAGTAATCAGTAAAGA--AAAATGGTAAAG
1 AGTAAAAAGTAAAAAG-GTAATCAGTAAAGAGTAAAA-GGTAATT
*
66912 AGTAAAGAGTAAA
1 AGTAAAAAGTAAA
66925 GTAAAGAGTA
Statistics
Matches: 344, Mismatches: 75, Indels: 103
0.66 0.14 0.20
Matches are distributed among these distances:
31 4 0.01
32 3 0.01
33 5 0.01
35 3 0.01
36 7 0.02
37 2 0.01
38 16 0.05
39 7 0.02
40 40 0.12
41 21 0.06
42 109 0.32
43 38 0.11
44 71 0.21
45 2 0.01
48 3 0.01
49 5 0.01
50 4 0.01
51 4 0.01
ACGTcount: A:0.52, C:0.05, G:0.22, T:0.21
Consensus pattern (43 bp):
AGTAAAAAGTAAAAAGGTAATCAGTAAAGAGTAAAAGGTAATT
Found at i:66465 original size:22 final size:21
Alignment explanation
Indices: 66453--66591 Score: 60
Period size: 22 Copynumber: 6.6 Consensus size: 21
66443 AAACGGTAAT
66453 TAGTAAAGAGT-AAAGCGATAAT
1 TAGTAAAGAGTAAAAG-G-TAAT
* * *
66475 CAGTAAAGAGTAATA-GAAAT
1 TAGTAAAGAGTAAAAGGTAAT
* * *
66495 CAGT-AAGAAGTAATA-GTAAA
1 TAGTAAAG-AGTAAAAGGTAAT
* *
66515 CAGTAAAAAGTAAAAAGGTAAT
1 TAGTAAAGAGT-AAAAGGTAAT
*
66537 CT-GTAAAAAGTAAAAAGGT-AT
1 -TAGTAAAGAGT-AAAAGGTAAT
*
66558 CT-G-AAAGGGTAAAATGGTAAT
1 -TAGTAAAGAGTAAAA-GGTAAT
66579 TAGTAAAGAGTAA
1 TAGTAAAGAGTAA
66592 TCAGTGGAAG
Statistics
Matches: 95, Mismatches: 12, Indels: 20
0.75 0.09 0.16
Matches are distributed among these distances:
19 7 0.07
20 33 0.35
21 14 0.15
22 39 0.41
23 2 0.02
ACGTcount: A:0.53, C:0.04, G:0.22, T:0.22
Consensus pattern (21 bp):
TAGTAAAGAGTAAAAGGTAAT
Found at i:66497 original size:20 final size:20
Alignment explanation
Indices: 66454--66527 Score: 73
Period size: 20 Copynumber: 3.6 Consensus size: 20
66444 AACGGTAATT
66454 AGTAAAGAGTAA-AGCGATAATC
1 AGTAAAGAGTAATA--GA-AATC
66476 AGTAAAGAGTAATAGAAATC
1 AGTAAAGAGTAATAGAAATC
66496 AGT-AAGAAGTAATAGTAAA-C
1 AGTAAAG-AGTAATAG-AAATC
*
66516 AGTAAAAAGTAA
1 AGTAAAGAGTAA
66528 AAAGGTAATC
Statistics
Matches: 47, Mismatches: 1, Indels: 10
0.81 0.02 0.17
Matches are distributed among these distances:
19 3 0.06
20 24 0.51
21 7 0.15
22 12 0.26
23 1 0.02
ACGTcount: A:0.55, C:0.05, G:0.20, T:0.19
Consensus pattern (20 bp):
AGTAAAGAGTAATAGAAATC
Found at i:66571 original size:20 final size:21
Alignment explanation
Indices: 66517--66560 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 21
66507 ATAGTAAACA
66517 GTAAAAAGTAAAAAGGTAATCT
1 GTAAAAAGTAAAAAGGT-ATCT
66539 GTAAAAAGTAAAAAGGTATCT
1 GTAAAAAGTAAAAAGGTATCT
66560 G
1 G
66561 AAAGGGTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.52, C:0.05, G:0.20, T:0.23
Consensus pattern (21 bp):
GTAAAAAGTAAAAAGGTATCT
Found at i:66639 original size:126 final size:124
Alignment explanation
Indices: 66392--66718 Score: 355
Period size: 126 Copynumber: 2.6 Consensus size: 124
66382 TTAAGTTCCA
* * *
66392 AAAAAGTAAAAAGGGCAATCAGTAAAAAGTAAAAAGGTATCTGAAAGGGTAAAACGGTAATTAGT
1 AAAAAGTAAAAA-GGTAATCTGTAAAAAGTAAAAAGGTATCTGAAAGGGTAAAATGGTAATTAGT
* * *
66457 AAAGAGTAAAGCGATAATCAGTAAAGAGTAATAGAAATCAGTAAGAAGTAATAGTAAACAGT
65 AAAGAGTAAAGAGATAATCAGTAAAGAG-AATAGAAATCAGTAAGAAGAAAGAGT-AACAGT
66519 AAAAAGTAAAAAGGTAATCTGTAAAAAGTAAAAAGGTATCTGAAAGGGTAAAATGGTAATTAGTA
1 AAAAAGTAAAAAGGTAATCTGTAAAAAGTAAAAAGGTATCTGAAAGGGTAAAATGGTAATTAGTA
* * *
66584 AAGAGTAATCAGTGGAAGAGTAATCAGTAAAGA-CA-A-AAATGA-T-A-AAGAAAGAGTAATAG
66 AAGAGTAA--A---G-AGA-TAATCAGTAAAGAGAATAGAAATCAGTAAGAAGAAAGAGTAACAG
66643 T
124 T
* ** *
66644 -AAGAGTAAAAAGGTAAAATGGTAAAAAGT-AAAAGGTAATCAGTAAAGGGTAAAATGGTAATTA
1 AAAAAGTAAAAAGGTAATCT-GTAAAAAGTAAAAAGGT-ATCTG-AAAGGGTAAAATGGTAATTA
*
66707 GTAAAAAGTAAA
63 GTAAAGAGTAAA
66719 ATGCTAATCA
Statistics
Matches: 176, Mismatches: 14, Indels: 23
0.83 0.07 0.11
Matches are distributed among these distances:
124 24 0.14
125 18 0.10
126 96 0.55
127 13 0.07
128 2 0.01
129 5 0.03
130 1 0.01
131 2 0.01
132 2 0.01
133 13 0.07
ACGTcount: A:0.54, C:0.04, G:0.22, T:0.20
Consensus pattern (124 bp):
AAAAAGTAAAAAGGTAATCTGTAAAAAGTAAAAAGGTATCTGAAAGGGTAAAATGGTAATTAGTA
AAGAGTAAAGAGATAATCAGTAAAGAGAATAGAAATCAGTAAGAAGAAAGAGTAACAGT
Found at i:66687 original size:14 final size:14
Alignment explanation
Indices: 66648--66719 Score: 56
Period size: 14 Copynumber: 4.9 Consensus size: 14
66638 AATAGTAAGA
66648 GTAAAAAGGTAAAATG
1 GTAAAAA-GTAAAA-G
66664 GTAAAAAGTAAAAG
1 GTAAAAAGTAAAAG
** *
66678 GTAATCAGTAAAGG
1 GTAAAAAGTAAAAG
* *
66692 GTAAAATGGTAATTA-
1 GTAAAA-AGTAA-AAG
66707 GTAAAAAGTAAAA
1 GTAAAAAGTAAAA
66720 TGCTAATCAG
Statistics
Matches: 44, Mismatches: 10, Indels: 7
0.72 0.16 0.11
Matches are distributed among these distances:
13 1 0.02
14 20 0.45
15 16 0.36
16 7 0.16
ACGTcount: A:0.56, C:0.01, G:0.22, T:0.21
Consensus pattern (14 bp):
GTAAAAAGTAAAAG
Found at i:66702 original size:22 final size:22
Alignment explanation
Indices: 66664--66924 Score: 177
Period size: 22 Copynumber: 12.5 Consensus size: 22
66654 AGGTAAAATG
*
66664 GTAAAAAGTAAAA-GGTAATCA
1 GTAAAGAGTAAAATGGTAATCA
* *
66685 GTAAAGGGTAAAATGGTAATTA
1 GTAAAGAGTAAAATGGTAATCA
* *
66707 GTAAAAAGTAAAATGCTAATCA
1 GTAAAGAGTAAAATGGTAATCA
* *
66729 GT-----G-AAAATGCTAGTCA
1 GTAAAGAGTAAAATGGTAATCA
* *
66745 GTAAAGAGT--AATAGTGATCA
1 GTAAAGAGTAAAATGGTAATCA
66765 GT-AAGAAGT--AATGGTAATCA
1 GTAAAG-AGTAAAATGGTAATCA
*
66785 GT-AAGA--AGCAATGGTAATCA
1 GTAAAGAGTA-AAATGGTAATCA
66805 GTGAAA-AGTACAAA-GGTAATCA
1 GT-AAAGAGTA-AAATGGTAATCA
* *
66827 GTAAA-AGGTAAAATAGTAATTA
1 GTAAAGA-GTAAAATGGTAATCA
*
66849 GAAAAGAGTAAAATGGTAATCA
1 GTAAAGAGTAAAATGGTAATCA
*
66871 GTAAAAAGTAAAA-GAGTAATCA
1 GTAAAGAGTAAAATG-GTAATCA
**
66893 GTAAAGA--AAAATGGTAAAGA
1 GTAAAGAGTAAAATGGTAATCA
66913 GTAAAGAGTAAA
1 GTAAAGAGTAAA
66925 GTAAAGAGTA
Statistics
Matches: 192, Mismatches: 26, Indels: 43
0.74 0.10 0.16
Matches are distributed among these distances:
16 14 0.07
17 1 0.01
19 4 0.02
20 55 0.29
21 22 0.11
22 92 0.48
23 4 0.02
ACGTcount: A:0.51, C:0.05, G:0.22, T:0.21
Consensus pattern (22 bp):
GTAAAGAGTAAAATGGTAATCA
Found at i:66737 original size:16 final size:16
Alignment explanation
Indices: 66716--66746 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
66706 AGTAAAAAGT
66716 AAAATGCTAATCAGTG
1 AAAATGCTAATCAGTG
*
66732 AAAATGCTAGTCAGT
1 AAAATGCTAATCAGT
66747 AAAGAGTAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.13, G:0.19, T:0.26
Consensus pattern (16 bp):
AAAATGCTAATCAGTG
Found at i:66911 original size:27 final size:25
Alignment explanation
Indices: 66881--66962 Score: 68
Period size: 27 Copynumber: 3.4 Consensus size: 25
66871 GTAAAAAGTA
66881 AAAGAGTAATCAGTAAAGAAAAATGGT
1 AAAGAGTAATCAG-AAAG-AAAATGGT
*
66908 AAAGAGTAA--AG--AGTAAA--GT
1 AAAGAGTAATCAGAAAGAAAATGGT
66927 AAAGAGTAATCAGCAAAGTAAAATGGT
1 AAAGAGTAATCAG-AAAG-AAAATGGT
*
66954 AAAAAGTAA
1 AAAGAGTAA
66963 AAGAGTAATC
Statistics
Matches: 44, Mismatches: 3, Indels: 16
0.70 0.05 0.25
Matches are distributed among these distances:
19 11 0.25
21 5 0.11
22 2 0.05
24 2 0.05
25 5 0.11
27 19 0.43
ACGTcount: A:0.57, C:0.04, G:0.22, T:0.17
Consensus pattern (25 bp):
AAAGAGTAATCAGAAAGAAAATGGT
Found at i:66918 original size:7 final size:7
Alignment explanation
Indices: 66870--66935 Score: 50
Period size: 7 Copynumber: 9.7 Consensus size: 7
66860 AATGGTAATC
*
66870 AGTAAAA
1 AGTAAAG
66877 AGTAAAAG
1 AGT-AAAG
**
66885 AGTAATC
1 AGTAAAG
66892 AGTAAAG
1 AGTAAAG
*
66899 A-AAAATG
1 AGTAAA-G
66906 -GTAAAG
1 AGTAAAG
66912 AGTAAAG
1 AGTAAAG
66919 AGT-AA-
1 AGTAAAG
66924 AGTAAAG
1 AGTAAAG
66931 AGTAA
1 AGTAA
66936 TCAGCAAAGT
Statistics
Matches: 46, Mismatches: 7, Indels: 12
0.71 0.11 0.18
Matches are distributed among these distances:
5 3 0.07
6 8 0.17
7 29 0.63
8 6 0.13
ACGTcount: A:0.59, C:0.02, G:0.23, T:0.17
Consensus pattern (7 bp):
AGTAAAG
Found at i:66938 original size:46 final size:47
Alignment explanation
Indices: 66875--66980 Score: 151
Period size: 46 Copynumber: 2.2 Consensus size: 47
66865 TAATCAGTAA
* *
66875 AAAGTAAAAGAGTAATCAGTAAAGAAAAATGGTAAAGAGT-AAAGAGT
1 AAAGT-AAAGAGTAATCAGCAAAGAAAAATGGTAAAAAGTAAAAGAGT
*
66922 AAAGTAAAGAGTAATCAGCAAAGTAAAATGGTAAAAAGTAAAAGAGT
1 AAAGTAAAGAGTAATCAGCAAAGAAAAATGGTAAAAAGTAAAAGAGT
66969 AATCAGTAAAGA
1 AA--AGTAAAGA
66981 AAAAGGGTAA
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
46 31 0.58
47 14 0.26
49 8 0.15
ACGTcount: A:0.58, C:0.04, G:0.22, T:0.17
Consensus pattern (47 bp):
AAAGTAAAGAGTAATCAGCAAAGAAAAATGGTAAAAAGTAAAAGAGT
Found at i:66944 original size:19 final size:19
Alignment explanation
Indices: 66906--66948 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
66896 AAGAAAAATG
* *
66906 GTAAAGAGTAAAGAGTAAA
1 GTAAAGAGTAAACAGCAAA
*
66925 GTAAAGAGTAATCAGCAAA
1 GTAAAGAGTAAACAGCAAA
66944 GTAAA
1 GTAAA
66949 ATGGTAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.16
Consensus pattern (19 bp):
GTAAAGAGTAAACAGCAAA
Found at i:66973 original size:35 final size:34
Alignment explanation
Indices: 66924--67069 Score: 168
Period size: 35 Copynumber: 4.2 Consensus size: 34
66914 TAAAGAGTAA
* * *
66924 AGTAAAGAGTAATCAGCAAAGTAAAATGGTAAAA
1 AGTAAAGAGTAATCAGTAAAGAAAAATGGTAAAG
*
66958 AGTAAAAGAGTAATCAGTAAAGAAAAAGGGTAAAG
1 AGT-AAAGAGTAATCAGTAAAGAAAAATGGTAAAG
* * * *
66993 AGTGAAG-GGAAGTCAGTAAAGAAGAATGGTGAAG
1 AGTAAAGAGTAA-TCAGTAAAGAAAAATGGTAAAG
67027 AGTAAAGAGTAATCCAGTAAAGAAAAAAATGGTAAAG
1 AGTAAAGAGTAAT-CAGTAAAG--AAAAATGGTAAAG
67064 AGTAAA
1 AGTAAA
67070 ATATTAACCA
Statistics
Matches: 93, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
33 3 0.03
34 32 0.34
35 41 0.44
37 17 0.18
ACGTcount: A:0.54, C:0.04, G:0.26, T:0.16
Consensus pattern (34 bp):
AGTAAAGAGTAATCAGTAAAGAAAAATGGTAAAG
Found at i:67168 original size:21 final size:21
Alignment explanation
Indices: 67108--67174 Score: 64
Period size: 21 Copynumber: 3.1 Consensus size: 21
67098 CAGCAAAGAT
* *
67108 TAAAATGGTAACTAGTAATCAG
1 TAAAATAGTAA-TGGTAATCAG
* * *
67130 TACAA-AGTAAAGAATAATCAG
1 TAAAATAGTAATG-GTAATCAG
67151 TAAAATAGTAATGGTAATCAG
1 TAAAATAGTAATGGTAATCAG
67172 TAA
1 TAA
67175 TTCAGTAAAA
Statistics
Matches: 35, Mismatches: 8, Indels: 5
0.73 0.17 0.10
Matches are distributed among these distances:
21 25 0.71
22 10 0.29
ACGTcount: A:0.51, C:0.07, G:0.16, T:0.25
Consensus pattern (21 bp):
TAAAATAGTAATGGTAATCAG
Found at i:72941 original size:38 final size:38
Alignment explanation
Indices: 72890--72965 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
72880 TTGAAGCAAG
72890 GCCGAGACTTAGATGGATTTTACTCCTACAAGAATTCA
1 GCCGAGACTTAGATGGATTTTACTCCTACAAGAATTCA
72928 GCCGAGACTTAGATGGATTTTACTCCTACAAGAATTCA
1 GCCGAGACTTAGATGGATTTTACTCCTACAAGAATTCA
72966 ACATTGAGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (38 bp):
GCCGAGACTTAGATGGATTTTACTCCTACAAGAATTCA
Found at i:81085 original size:10 final size:10
Alignment explanation
Indices: 81070--81095 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
81060 GAGGACTTTA
81070 GAATTTTCTG
1 GAATTTTCTG
81080 GAATTTTCTG
1 GAATTTTCTG
81090 GAATTT
1 GAATTT
81096 GGCAGCAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.23, C:0.08, G:0.19, T:0.50
Consensus pattern (10 bp):
GAATTTTCTG
Found at i:83852 original size:10 final size:10
Alignment explanation
Indices: 83837--83862 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
83827 AGTTGCTGCC
83837 AAATTCCAGA
1 AAATTCCAGA
83847 AAATTCCAGA
1 AAATTCCAGA
83857 AAATTC
1 AAATTC
83863 TAGAGTCTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.50, C:0.19, G:0.08, T:0.23
Consensus pattern (10 bp):
AAATTCCAGA
Found at i:84792 original size:13 final size:13
Alignment explanation
Indices: 84774--84806 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
84764 TTAATTATTG
84774 TTTGCTTTATTAA
1 TTTGCTTTATTAA
84787 TTTGCTTTATTAA
1 TTTGCTTTATTAA
*
84800 TCTGCTT
1 TTTGCTT
84807 AGATTTAGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.18, C:0.12, G:0.09, T:0.61
Consensus pattern (13 bp):
TTTGCTTTATTAA
Found at i:84816 original size:6 final size:6
Alignment explanation
Indices: 84805--84830 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
84795 ATTAATCTGC
84805 TTAGAT TTAGAT TTAGAT TTAGAT TT
1 TTAGAT TTAGAT TTAGAT TTAGAT TT
84831 GCTTTGCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (6 bp):
TTAGAT
Done.