Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013967.1 Corchorus capsularis cultivar CVL-1 contig13988, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4928
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.33


Found at i:3959 original size:61 final size:59

Alignment explanation


    Indices: 3887--4056  Score: 236
    Period size: 57  Copynumber: 2.9  Consensus size: 59

       3877 TTTTTAAAAT

                                                                         
       3887 TAAAAATAGCGGCGTCTAGACGCCGCTATATTTAAGGGTTTTTTATAAGAAAATCTCAAAC
          1 TAAAAATAGCGGCGTCTAGACGCCGCTATATTTAAGGGTTTTTT-TAA-AAAATCTCAAAC

                                                *  *                  *
       3948 TAAAAATAGCGGCGTCTAGACGCCGCTATA-TTAA-AGTGTTTTTAAAAAATCTCAAAT
          1 TAAAAATAGCGGCGTCTAGACGCCGCTATATTTAAGGGTTTTTTTAAAAAATCTCAAAC

                *     * *  *                                    
       4005 TAAATATAGCAGTGTTTAGACGCCGCTATATTTAAGGGTTTTTTTTAAAAAA
          1 TAAAAATAGCGGCGTCTAGACGCCGCTATATTTAAGGG-TTTTTTTAAAAAA

       4057 AAAATTCTCG


Statistics
Matches: 97,  Mismatches: 9, Indels: 7
        0.86            0.08        0.06

Matches are distributed among these distances:
  57   37  0.38
  58    7  0.07
  59    7  0.07
  60   16  0.16
  61   30  0.31

ACGTcount: A:0.36, C:0.14, G:0.17, T:0.32


Consensus pattern (59 bp):   
TAAAAATAGCGGCGTCTAGACGCCGCTATATTTAAGGGTTTTTTTAAAAAATCTCAAAC

Done.