Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013973.1 Corchorus capsularis cultivar CVL-1 contig13994, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5221
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28


Found at i:2266 original size:6 final size:6

Alignment explanation


    Indices: 2251--2288  Score: 69
    Period size: 6  Copynumber: 6.5  Consensus size: 6

       2241 AAAGCAAAAC

                                                         
       2251 AAAT-T AAATCT AAATCT AAATCT AAATCT AAATCT AAA
          1 AAATCT AAATCT AAATCT AAATCT AAATCT AAATCT AAA

       2289 GCAGATTAAT


Statistics
Matches: 32,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
   5    4  0.12
   6   28  0.88

ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32


Consensus pattern (6 bp):   
AAATCT

Found at i:2303 original size:13 final size:13

Alignment explanation


    Indices: 2285--2319  Score: 61
    Period size: 13  Copynumber: 2.7  Consensus size: 13

       2275 AATCTAAATC

                   *     
       2285 TAAAGCAGATTAA
          1 TAAAGCAAATTAA

                         
       2298 TAAAGCAAATTAA
          1 TAAAGCAAATTAA

                     
       2311 TAAAGCAAA
          1 TAAAGCAAA

       2320 CAATAATTAT


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  13   21  1.00

ACGTcount: A:0.60, C:0.09, G:0.11, T:0.20


Consensus pattern (13 bp):   
TAAAGCAAATTAA
Done.