Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013974.1 Corchorus capsularis cultivar CVL-1 contig13995, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15983

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3716--3745
14
2.1
14
100
0
60
13
36
0
50
1.42
5607--5680
34
2.1
35
92
2
123
43
8
20
28
1.80
5608--5668
18
3.4
18
70
19
56
47
8
19
24
1.76
9167--9298
40
3.3
41
80
9
146
50
6
19
24
1.70
9182--9305
40
3.1
42
83
11
152
50
6
20
22
1.71
9370--9598
22
10.1
22
68
19
125
51
6
20
20
1.69
9413--9461
15
3.0
17
82
11
66
55
6
16
22
1.63
9333--9743
75
5.4
77
77
16
322
52
5
20
21
1.67
9370--9720
117
3.0
118
78
9
423
51
5
20
21
1.68
9557--9628
30
2.4
29
86
6
92
56
4
19
19
1.57
9445--9620
42
4.1
43
86
6
135
52
6
20
20
1.67
9597--9671
22
3.5
21
75
7
62
56
4
18
21
1.58
9529--9743
73
2.9
72
89
4
299
52
4
20
22
1.65
9667--9755
21
4.1
21
71
12
65
47
4
22
25
1.70
11080--11117
17
2.1
19
85
9
53
0
15
13
71
1.16
13699--13731
13
2.5
13
95
0
57
72
0
0
27
0.85

Tables:   1

The End!