Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01013975.1 Corchorus capsularis cultivar CVL-1 contig13996, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8988
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27


Found at i:6409 original size:34 final size:35

Alignment explanation


    Indices: 6357--6430  Score: 123
    Period size: 34  Copynumber: 2.1  Consensus size: 35

       6347 TTTGGTTGCA

                                       *       
       6357 TTTAAAATGGCCAAAGTAAATTAAAAGTGTGTAGC
          1 TTTAAAATGGCCAAAGTAAATTAAAAGGGTGTAGC

                         *                     
       6392 TTTAAAA-GGCCATAGTAAATTAAAAGGGTGTAGC
          1 TTTAAAATGGCCAAAGTAAATTAAAAGGGTGTAGC

                 
       6426 TTTAA
          1 TTTAA

       6431 TGATCATTAG


Statistics
Matches: 37,  Mismatches: 2, Indels: 1
        0.93            0.05        0.03

Matches are distributed among these distances:
  34   30  0.81
  35    7  0.19

ACGTcount: A:0.42, C:0.08, G:0.20, T:0.30


Consensus pattern (35 bp):   
TTTAAAATGGCCAAAGTAAATTAAAAGGGTGTAGC

Done.