Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01013976.1 Corchorus capsularis cultivar CVL-1 contig13997, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10238
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Found at i:885 original size:40 final size:41
Alignment explanation
Indices: 771--902 Score: 128
Period size: 40 Copynumber: 3.3 Consensus size: 41
761 AGAAAGGGAT
** * * * *
771 TAATCAGTAATTTGATAATCAAGAGTCAAG-GTAAGAG-AT
1 TAATCAGTAAAATGGTAATTAAGAGTCAAGAGTAAAAGAAA
* *
810 TAATCAGTGAAATCAGTAATTAAAGAGTCAA-AGTAAAAGAAA
1 TAATCAGTAAAAT-GGTAATT-AAGAGTCAAGAGTAAAAGAAA
*
852 TAATCAGTAAAATGGTAATTAAGAGT-AAGAGTAAAAGAAG
1 TAATCAGTAAAATGGTAATTAAGAGTCAAGAGTAAAAGAAA
*
892 TAATCAATAAA
1 TAATCAGTAAA
903 TCGGTAAAGA
Statistics
Matches: 76, Mismatches: 12, Indels: 9
0.78 0.12 0.09
Matches are distributed among these distances:
39 12 0.16
40 30 0.39
41 21 0.28
42 13 0.17
ACGTcount: A:0.52, C:0.06, G:0.18, T:0.24
Consensus pattern (41 bp):
TAATCAGTAAAATGGTAATTAAGAGTCAAGAGTAAAAGAAA
Found at i:909 original size:40 final size:42
Alignment explanation
Indices: 791--909 Score: 131
Period size: 40 Copynumber: 2.9 Consensus size: 42
781 TTTGATAATC
* * * * *
791 AAGAGTCAAGGTAAGAG-ATTAATCAGTGAAATCAGTAATTA
1 AAGAGTCAAAGTAAAAGAAATAATCAGTAAAATCGGTAATTA
832 AAGAGTCAAAGTAAAAGAAATAATCAGTAAAAT-GGTAATT-
1 AAGAGTCAAAGTAAAAGAAATAATCAGTAAAATCGGTAATTA
* *
872 AAGAGT-AAGAGTAAAAGAAGTAATCAAT-AAATCGGTAA
1 AAGAGTCAA-AGTAAAAGAAATAATCAGTAAAATCGGTAA
910 AGAGTAAAAA
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
39 6 0.09
40 28 0.41
41 21 0.31
42 13 0.19
ACGTcount: A:0.52, C:0.06, G:0.20, T:0.22
Consensus pattern (42 bp):
AAGAGTCAAAGTAAAAGAAATAATCAGTAAAATCGGTAATTA
Found at i:926 original size:17 final size:17
Alignment explanation
Indices: 900--992 Score: 55
Period size: 17 Copynumber: 5.1 Consensus size: 17
890 AGTAATCAAT
* *
900 AAATCGGTAAAGAGTAA
1 AAATCAGTAAAAAGTAA
917 AAATCAGTAAAAAGTAAGA
1 AAATCAGTAAAAAGT-A-A
* *
936 AGGTAATCAGTTAAGAGT-A
1 A---AATCAGTAAAAAGTAA
955 AAAT-AGTAAAAAGTGATA
1 AAATCAGTAAAAAGT-A-A
*
973 ATAATCAGTAAAAGGTAA
1 A-AATCAGTAAAAAGTAA
991 AA
1 AA
993 TGGTAATCAG
Statistics
Matches: 59, Mismatches: 7, Indels: 20
0.69 0.08 0.23
Matches are distributed among these distances:
15 8 0.14
16 3 0.05
17 14 0.24
18 5 0.08
19 8 0.14
20 9 0.15
22 12 0.20
ACGTcount: A:0.56, C:0.04, G:0.19, T:0.20
Consensus pattern (17 bp):
AAATCAGTAAAAAGTAA
Found at i:991 original size:35 final size:36
Alignment explanation
Indices: 901--1168 Score: 113
Period size: 43 Copynumber: 6.9 Consensus size: 36
891 GTAATCAATA
*
901 AATCGGTAAAGAGTAAAAATCAGTAAAAAGTAAGAAGGT
1 AATCAGTAAAGAGT-AAAAT-AGTAAAAAGTAAGAA-GT
* * *
940 AATCAGTTAAGAGTAAAATAGTAAAAAGTGATAA-T
1 AATCAGTAAAGAGTAAAATAGTAAAAAGTAAGAAGT
* **
975 AATCAGTAAA-AGGTAAAATGGTAATCAGTAAGAGCAAAATGGT
1 AATCAGTAAAGA-GTAAAATAGTAAAAAGT-A-AG---AA--GT
*
1018 AATCAGTAAAGAGTAAAATCGTAAAAAGT---AA-T
1 AATCAGTAAAGAGTAAAATAGTAAAAAGTAAGAAGT
*
1050 AATCAGTAAA-ACGTAAAA-AGGTAATCATTAAG-AGCAAAATGGT
1 AATCAGTAAAGA-GTAAAATA-GTAA--A--AAGTA--AGAA--GT
1093 AATCAGTAAAGAGTAAAATAGTAATCAGTAAAAAGTAAGAAGGT
1 AATCAGTAAAGAGT---A-A--AAT-AGTAAAAAGTAAGAA-GT
*
1137 CATCAGTAAAGAGTAAAATAGTAAAAAAGTAA
1 AATCAGTAAAGAGTAAAATAGT-AAAAAGTAA
1169 TCAGTAAAAG
Statistics
Matches: 178, Mismatches: 16, Indels: 71
0.67 0.06 0.27
Matches are distributed among these distances:
31 1 0.01
32 21 0.12
34 2 0.01
35 26 0.15
36 3 0.02
37 17 0.10
38 17 0.10
39 12 0.07
40 5 0.03
41 1 0.01
43 38 0.21
44 18 0.10
45 3 0.02
46 4 0.02
47 2 0.01
48 1 0.01
49 2 0.01
50 4 0.02
51 1 0.01
ACGTcount: A:0.54, C:0.06, G:0.19, T:0.21
Consensus pattern (36 bp):
AATCAGTAAAGAGTAAAATAGTAAAAAGTAAGAAGT
Found at i:1002 original size:22 final size:22
Alignment explanation
Indices: 974--1160 Score: 89
Period size: 22 Copynumber: 8.1 Consensus size: 22
964 AAAGTGATAA
974 TAATCAGTAAAAGGTAAAATGG
1 TAATCAGTAAAAGGTAAAATGG
* *
996 TAATCAGTAAGA-GCAAAATGG
1 TAATCAGTAAAAGGTAAAATGG
*
1017 TAATCAGT-AAAGAGTAAAATCG
1 TAATCAGTAAAAG-GTAAAATGG
** *
1039 TAAAAAGTAATAATCAGTAAAACGTAAAAAGG
1 TAATCAGTAA-AA--GGTAAAA--T-----GG
* * *
1071 TAATCATTAAGA-GCAAAATGG
1 TAATCAGTAAAAGGTAAAATGG
*
1092 TAATCAGT-AAAGAGTAAAATAG
1 TAATCAGTAAAAG-GTAAAATGG
*
1114 TAATCAGTAAAAAGTAAGAA-GG
1 TAATCAGTAAAAGGTAA-AATGG
* *
1136 TCATCAGT-AAAGAGTAAAATAG
1 TAATCAGTAAAAG-GTAAAATGG
1158 TAA
1 TAA
1161 AAAAGTAATC
Statistics
Matches: 122, Mismatches: 24, Indels: 38
0.66 0.13 0.21
Matches are distributed among these distances:
20 4 0.03
21 30 0.25
22 58 0.48
23 6 0.05
24 2 0.02
25 6 0.05
26 1 0.01
27 1 0.01
28 5 0.04
31 1 0.01
32 8 0.07
ACGTcount: A:0.52, C:0.07, G:0.19, T:0.21
Consensus pattern (22 bp):
TAATCAGTAAAAGGTAAAATGG
Found at i:1022 original size:43 final size:43
Alignment explanation
Indices: 974--1233 Score: 134
Period size: 43 Copynumber: 5.6 Consensus size: 43
964 AAAGTGATAA
974 TAATCAGTAAA-AGGTAAAATGGTAATCAGTAAGAGCAAAATGG
1 TAATCAGTAAAGA-GTAAAATGGTAATCAGTAAGAGCAAAATGG
* * *
1017 TAATCAGTAAAGAGTAAAATCGTAAAAAGTAATAATCAGTAAAACGTAAAAAGG
1 TAATCAGTAAAGAGTAAAAT-G------G---TAATCAGTAAGA-GCAAAATGG
* * * *
1071 TAATCA-TTAAGAGCAAAATGGTAATCAGTAAAGAGTAAAATAG
1 TAATCAGTAAAGAGTAAAATGGTAATCAGT-AAGAGCAAAATGG
* * *
1114 TAATCAGTAAAAAGTAAGAA-GGTCATCAGTAAAGAGTAAAATAGTAAAAAAG
1 TAATCAGTAAAGAGTAA-AATGGTAATCAGT-AAGAGCAAAAT-G-------G
*
1166 TAATCAGTAAA-AGGTAAAATAGTAATCAGTAAGAGCAAAAATGG
1 TAATCAGTAAAGA-GTAAAATGGTAATCAGTAAGAGC-AAAATGG
* * *
1210 TTATTAG-AAAGAGTAAAATAGTAA
1 TAATCAGTAAAGAGTAAAATGGTAA
1234 AAAAGTAATC
Statistics
Matches: 172, Mismatches: 18, Indels: 54
0.70 0.07 0.22
Matches are distributed among these distances:
43 54 0.31
44 40 0.23
45 2 0.01
46 1 0.01
50 1 0.01
51 9 0.05
52 30 0.17
53 22 0.13
54 13 0.08
ACGTcount: A:0.53, C:0.06, G:0.19, T:0.22
Consensus pattern (43 bp):
TAATCAGTAAAGAGTAAAATGGTAATCAGTAAGAGCAAAATGG
Found at i:1058 original size:17 final size:17
Alignment explanation
Indices: 1017--1065 Score: 66
Period size: 15 Copynumber: 3.0 Consensus size: 17
1007 AGCAAAATGG
*
1017 TAATCAGTAAAGAGTAA
1 TAATCAGTAAAAAGTAA
1034 -AATC-GTAAAAAGTAA
1 TAATCAGTAAAAAGTAA
*
1049 TAATCAGTAAAACGTAA
1 TAATCAGTAAAAAGTAA
1066 AAAGGTAATC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 10 0.36
16 8 0.29
17 10 0.36
ACGTcount: A:0.55, C:0.08, G:0.14, T:0.22
Consensus pattern (17 bp):
TAATCAGTAAAAAGTAA
Found at i:1083 original size:75 final size:77
Alignment explanation
Indices: 937--1116 Score: 292
Period size: 75 Copynumber: 2.4 Consensus size: 77
927 AAAGTAAGAA
* * *
937 GGTAATCAGTTAAGAGTAAAATAGTAAAAAGTGATAATAATCAGTAAAAGGTAAAATGGTAATCA
1 GGTAATCAGTAAAGAGTAAAATAGTAAAAAG-GATAATAATCAGTAAAACGTAAAAAGGTAATCA
1002 GTAAGAGCAAAAT
65 GTAAGAGCAAAAT
* *
1015 GGTAATCAGTAAAGAGTAAAATCGTAAAAA-G-TAATAATCAGTAAAACGTAAAAAGGTAATCAT
1 GGTAATCAGTAAAGAGTAAAATAGTAAAAAGGATAATAATCAGTAAAACGTAAAAAGGTAATCAG
1078 TAAGAGCAAAAT
66 TAAGAGCAAAAT
1090 GGTAATCAGTAAAGAGTAAAATAGTAA
1 GGTAATCAGTAAAGAGTAAAATAGTAA
1117 TCAGTAAAAA
Statistics
Matches: 96, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
75 67 0.70
76 1 0.01
78 28 0.29
ACGTcount: A:0.52, C:0.06, G:0.19, T:0.22
Consensus pattern (77 bp):
GGTAATCAGTAAAGAGTAAAATAGTAAAAAGGATAATAATCAGTAAAACGTAAAAAGGTAATCAG
TAAGAGCAAAAT
Found at i:1093 original size:21 final size:22
Alignment explanation
Indices: 1049--1160 Score: 95
Period size: 22 Copynumber: 5.1 Consensus size: 22
1039 TAAAAAGTAA
* *
1049 TAATCAGTAAA-ACGTAAAAAGG
1 TAATCAGTAAAGA-GCAAAATGG
*
1071 TAATCA-TTAAGAGCAAAATGG
1 TAATCAGTAAAGAGCAAAATGG
* *
1092 TAATCAGTAAAGAGTAAAATAG
1 TAATCAGTAAAGAGCAAAATGG
* *
1114 TAATCAGTAAAAAGTAAGAA-GG
1 TAATCAGTAAAGAGCAA-AATGG
* * *
1136 TCATCAGTAAAGAGTAAAATAG
1 TAATCAGTAAAGAGCAAAATGG
1158 TAA
1 TAA
1161 AAAAGTAATC
Statistics
Matches: 74, Mismatches: 12, Indels: 8
0.79 0.13 0.09
Matches are distributed among these distances:
21 18 0.24
22 54 0.73
23 2 0.03
ACGTcount: A:0.53, C:0.07, G:0.19, T:0.21
Consensus pattern (22 bp):
TAATCAGTAAAGAGCAAAATGG
Found at i:1172 original size:30 final size:29
Alignment explanation
Indices: 1119--1190 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 29
1109 AATAGTAATC
* * *
1119 AGTAAAA-AGTAAGAAGGTCATCAGTAAA
1 AGTAAAATAGTAAAAAAGTAATCAGTAAA
1147 GAGTAAAATAGTAAAAAAGTAATCAGTAAA
1 -AGTAAAATAGTAAAAAAGTAATCAGTAAA
1177 AGGTAAAATAGTAA
1 A-GTAAAATAGTAA
1191 TCAGTAAGAG
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
29 8 0.21
30 30 0.79
ACGTcount: A:0.57, C:0.04, G:0.19, T:0.19
Consensus pattern (29 bp):
AGTAAAATAGTAAAAAAGTAATCAGTAAA
Found at i:1180 original size:44 final size:43
Alignment explanation
Indices: 1085--1182 Score: 124
Period size: 44 Copynumber: 2.2 Consensus size: 43
1075 CATTAAGAGC
**
1085 AAAATGGTAATCAGTAAAGAGTAAAATAGTAATCAGTAAAAAGT
1 AAAA-GGTAATCAGTAAAGAGTAAAATAGTAAAAAGTAAAAAGT
* **
1129 AAGAAGGTCATCAGTAAAGAGTAAAATAGTAAAAAAGTAATCAGT
1 AA-AAGGTAATCAGTAAAGAGTAAAATAGT-AAAAAGTAAAAAGT
1174 AAAAGGTAA
1 AAAAGGTAA
1183 AATAGTAATC
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
44 32 0.70
45 14 0.30
ACGTcount: A:0.55, C:0.05, G:0.19, T:0.20
Consensus pattern (43 bp):
AAAAGGTAATCAGTAAAGAGTAAAATAGTAAAAAGTAAAAAGT
Found at i:1194 original size:52 final size:51
Alignment explanation
Indices: 1104--1205 Score: 134
Period size: 52 Copynumber: 2.0 Consensus size: 51
1094 ATCAGTAAAG
* * * *
1104 AGTAAAATAGTAATCAGTAAAAAGTAAGAAGGTCATCAGTAAAGAGTAAAAT
1 AGTAAAAAAGTAATCAGTAAAAAGTAAGAAAGTAATCAGT-AAGAGCAAAAT
*
1156 AGTAAAAAAGTAATCAGTAAAAGGTAA-AATAGTAATCAGTAAGAGCAAAA
1 AGTAAAAAAGTAATCAGTAAAAAGTAAGAA-AGTAATCAGTAAGAGCAAAA
1206 ATGGTTATTA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
51 11 0.25
52 33 0.75
ACGTcount: A:0.56, C:0.06, G:0.19, T:0.20
Consensus pattern (51 bp):
AGTAAAAAAGTAATCAGTAAAAAGTAAGAAAGTAATCAGTAAGAGCAAAAT
Found at i:1206 original size:22 final size:21
Alignment explanation
Indices: 1159--1233 Score: 62
Period size: 22 Copynumber: 3.5 Consensus size: 21
1149 GTAAAATAGT
*
1159 AAAAA-AGTAATCAGTAAAAGG
1 AAAAATAGTAATCAGTAAGA-G
*
1180 TAAAATAGTAATCAGTAAGAG
1 AAAAATAGTAATCAGTAAGAG
* * * *
1201 CAAAAATGGTTATTAGAAAGAG
1 -AAAAATAGTAATCAGTAAGAG
*
1223 TAAAATAGTAA
1 AAAAATAGTAA
1234 AAAAGTAATC
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
21 13 0.31
22 29 0.69
ACGTcount: A:0.56, C:0.04, G:0.19, T:0.21
Consensus pattern (21 bp):
AAAAATAGTAATCAGTAAGAG
Found at i:1253 original size:73 final size:72
Alignment explanation
Indices: 1091--1305 Score: 299
Period size: 73 Copynumber: 2.9 Consensus size: 72
1081 GAGCAAAATG
* * * * *
1091 GTAATCAGTAAAGAGTAAAATAGTAATCAGTAAAAAGTAAGAA-GGTCATCAGTAAAGAGTAAAA
1 GTAATCAGTAAAG-GTAAAATAGTAATCAGT-AAGAGCAAAAATGGTTATTAG-AAAGAGTAAAA
1155 TAGTAAAAAA
63 TAGTAAAAAA
1165 GTAATCAGTAAAAGGTAAAATAGTAATCAGTAAGAGCAAAAATGGTTATTAGAAAGAGTAAAATA
1 GTAATCAGT-AAAGGTAAAATAGTAATCAGTAAGAGCAAAAATGGTTATTAGAAAGAGTAAAATA
1230 GTAAAAAA
65 GTAAAAAA
* * *
1238 GTAATCAGTGTAAGGTAAAATAGTAATCAGTAAGAGC-TAAATGGTTATTAGAAAGAGTAAGATA
1 GTAATCAGT-AAAGGTAAAATAGTAATCAGTAAGAGCAAAAATGGTTATTAGAAAGAGTAAAATA
1302 GTAA
65 GTAA
1306 TCTGTAAAAA
Statistics
Matches: 130, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
72 29 0.22
73 64 0.49
74 33 0.25
75 4 0.03
ACGTcount: A:0.52, C:0.05, G:0.20, T:0.23
Consensus pattern (72 bp):
GTAATCAGTAAAGGTAAAATAGTAATCAGTAAGAGCAAAAATGGTTATTAGAAAGAGTAAAATAG
TAAAAAA
Found at i:1253 original size:117 final size:117
Alignment explanation
Indices: 1019--1241 Score: 308
Period size: 117 Copynumber: 1.9 Consensus size: 117
1009 CAAAATGGTA
* *
1019 ATCAGTAAAGAGTAAAATCGTAAAAAGTAATAATCAGTAAAACGTAAAAAGGTAATCATTAAGAG
1 ATCAGTAAAGAGTAAAATAGTAAAAAG-AATAATCAGTAAAACGTAAAAAGGTAATCAGTAAGAG
**
1084 CAAAATGGTAATCAGTAAAGAGTAAAATAGTAATCAGTAAAAAGTAAGAAGGTC
65 CAAAATGGTAATCAGTAAAGAGTAAAATAGTAAAAAGTAAAAAGT-AGAAGGTC
* *
1138 ATCAGTAAAGAGTAAAATAGTAAAAA-AGTAATCAGTAAAAGGTAAAATA-GTAATCAGTAAGAG
1 ATCAGTAAAGAGTAAAATAGTAAAAAGAATAATCAGTAAAACGTAAAA-AGGTAATCAGTAAGAG
* *
1201 CAAAAATGGTTATTAG-AAAGAGTAAAATAGTAAAAAAGTAA
65 C-AAAATGGTAATCAGTAAAGAGTAAAATAGT-AAAAAGTAA
1242 TCAGTGTAAG
Statistics
Matches: 93, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
117 48 0.52
118 20 0.22
119 25 0.27
ACGTcount: A:0.55, C:0.06, G:0.18, T:0.21
Consensus pattern (117 bp):
ATCAGTAAAGAGTAAAATAGTAAAAAGAATAATCAGTAAAACGTAAAAAGGTAATCAGTAAGAGC
AAAATGGTAATCAGTAAAGAGTAAAATAGTAAAAAGTAAAAAGTAGAAGGTC
Found at i:1278 original size:22 final size:21
Alignment explanation
Indices: 1229--1312 Score: 64
Period size: 21 Copynumber: 4.0 Consensus size: 21
1219 AGAGTAAAAT
*
1229 AGTAAAAAAGTAATCAGTGTAAG
1 AGTAAAATAGTAATCA--GTAAG
1252 -GTAAAATAGTAATCAGTAAG
1 AGTAAAATAGTAATCAGTAAG
* * * *
1272 AGCT-AAATGGTTATTAGAAAG
1 AG-TAAAATAGTAATCAGTAAG
* *
1293 AGTAAGATAGTAATCTGTAA
1 AGTAAAATAGTAATCAGTAA
1313 AAAGTGAAAG
Statistics
Matches: 47, Mismatches: 11, Indels: 8
0.71 0.17 0.12
Matches are distributed among these distances:
20 6 0.13
21 26 0.55
22 15 0.32
ACGTcount: A:0.48, C:0.05, G:0.21, T:0.26
Consensus pattern (21 bp):
AGTAAAATAGTAATCAGTAAG
Found at i:3310 original size:21 final size:21
Alignment explanation
Indices: 3284--3329 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
3274 CATATGACTG
*
3284 GCCAAAGCATGGAGGAGCCGC
1 GCCAAAGCAAGGAGGAGCCGC
* *
3305 GCCAAAGCAAGTAGTAGCCGC
1 GCCAAAGCAAGGAGGAGCCGC
3326 GCCA
1 GCCA
3330 TCGCATGGGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.30, G:0.33, T:0.07
Consensus pattern (21 bp):
GCCAAAGCAAGGAGGAGCCGC
Found at i:9646 original size:14 final size:14
Alignment explanation
Indices: 9627--9654 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
9617 GTATATTAAC
9627 TTTAGTCCATTTAG
1 TTTAGTCCATTTAG
9641 TTTAGTCCATTTAG
1 TTTAGTCCATTTAG
9655 ATTACTATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.14, T:0.50
Consensus pattern (14 bp):
TTTAGTCCATTTAG
Found at i:9867 original size:20 final size:20
Alignment explanation
Indices: 9842--9880 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
9832 AAATACAAGG
9842 CATTTGATTTACAAATTGGA
1 CATTTGATTTACAAATTGGA
*
9862 CATTTGATTTGCAAATTGG
1 CATTTGATTTACAAATTGG
9881 TGCTCTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.41
Consensus pattern (20 bp):
CATTTGATTTACAAATTGGA
Done.