Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013977.1 Corchorus capsularis cultivar CVL-1 contig13998, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65530

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3621--3682
10
6.1
10
81
10
72
75
0
22
1
0.88
3628--3691
20
3.0
21
73
13
60
75
0
23
1
0.90
3639--3692
17
3.0
17
76
21
56
72
0
25
1
0.95
3624--3691
31
2.2
31
84
2
93
76
0
22
1
0.87
3704--3850
45
3.2
44
81
9
177
38
6
19
36
1.76
4223--4274
21
2.6
21
72
6
54
63
0
21
15
1.31
4221--4278
28
2.2
25
82
11
71
62
0
24
13
1.32
4573--4634
6
10.7
6
81
13
76
80
0
16
3
0.83
4578--4634
22
2.5
22
88
5
78
80
0
15
3
0.84
4562--4633
17
4.3
16
81
10
74
81
0
13
4
0.82
5519--5949
69
6.2
70
79
5
448
25
29
18
26
1.98
5519--5949
139
3.1
138
91
1
695
25
29
18
26
1.98
6059--6239
48
3.8
47
85
2
236
20
24
17
38
1.93
6059--6239
95
1.9
95
85
2
247
20
24
17
38
1.93
6889--6915
14
1.9
14
100
0
54
22
14
7
55
1.64
7102--7140
20
2.0
20
94
0
69
30
10
17
41
1.83
10593--10621
13
2.1
14
93
6
51
20
27
10
41
1.85
13037--13070
16
2.2
16
89
5
52
58
8
2
29
1.43
15993--16061
34
2.1
34
86
2
95
56
11
1
30
1.44
23030--23063
16
2.2
16
89
5
52
58
8
2
29
1.43
25483--25516
10
3.0
12
83
16
54
26
41
26
5
1.78
27014--27044
2
16.0
2
93
6
55
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38824--38903
39
2.1
39
100
0
160
57
17
5
20
1.58
39092--39154
26
2.3
29
86
10
89
33
30
17
19
1.95
39473--39794
87
3.7
87
85
2
439
33
23
15
27
1.95
39758--39922
73
2.3
73
98
0
321
36
20
15
26
1.93
44418--44454
2
18.5
2
94
0
65
48
0
2
48
1.15
51100--51133
9
3.8
9
96
0
59
17
35
0
47
1.48

Tables:   1

The End!