Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013983.1 Corchorus capsularis cultivar CVL-1 contig14004, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82289

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11678--11827
30
4.9
30
82
4
192
18
17
39
25
1.91
11676--11828
63
2.5
61
87
3
200
18
17
39
24
1.92
13887--13959
28
2.6
28
91
0
110
15
12
28
43
1.82
18529--18589
19
3.4
16
68
23
50
50
6
16
26
1.69
18495--18625
38
3.5
38
85
5
133
47
6
18
27
1.74
18662--18974
34
8.9
35
66
18
143
49
5
18
26
1.70
18903--18982
40
2.0
41
92
7
137
50
7
18
23
1.73
18878--18997
40
3.3
35
76
17
104
49
8
16
25
1.74
18661--19036
74
5.3
74
78
10
304
48
5
19
26
1.71
19082--19177
50
1.9
50
85
4
131
55
3
19
21
1.57
19087--19199
50
2.3
50
79
3
120
57
1
21
19
1.50
19123--19249
35
3.6
35
87
3
157
54
3
23
18
1.58
19137--19205
28
2.4
29
76
7
70
59
1
21
17
1.45
19239--19292
15
3.7
15
73
14
58
57
5
16
20
1.59
20187--20219
3
11.0
3
100
0
66
33
0
0
66
0.92
20884--21114
115
2.0
115
91
1
374
30
17
13
38
1.89
25487--25800
155
2.0
155
99
0
619
33
11
18
37
1.86
27004--27031
3
9.3
3
100
0
56
67
0
0
32
0.91
27112--27137
12
2.2
12
100
0
52
0
15
0
84
0.62
27583--27616
2
17.0
2
100
0
68
50
0
0
50
1.00
35895--35920
12
2.2
12
100
0
52
30
0
15
53
1.42
36673--36705
3
10.7
3
93
6
57
0
33
0
66
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40034--40827
320
2.5
310
89
4
1173
37
10
22
29
1.88
50500--50525
9
2.9
9
100
0
52
23
23
7
46
1.78
56823--56852
13
2.3
13
100
0
60
13
36
16
33
1.88
58864--58889
13
2.0
13
100
0
52
30
15
38
15
1.88
60901--61265
22
16.5
22
66
13
106
35
15
10
38
1.82
61273--61391
22
5.4
22
75
6
107
31
14
8
45
1.74
61930--62054
22
5.7
22
76
7
112
34
14
9
41
1.78
61994--62067
22
3.4
21
73
14
69
37
10
10
40
1.75
62082--62150
20
3.1
21
80
12
68
31
15
8
43
1.78
62097--62152
20
2.7
21
80
8
69
32
16
10
41
1.82
62187--62241
22
2.5
23
76
8
69
34
21
10
32
1.89
62614--62651
19
2.0
20
85
15
53
63
2
5
28
1.30
64349--64373
11
2.3
11
100
0
50
56
8
20
16
1.65
71233--71494
106
2.5
104
88
2
382
41
10
7
40
1.68
72926--72979
26
2.0
27
85
7
74
25
14
11
48
1.77
80209--80241
2
16.5
2
100
0
66
51
0
0
48
1.00

Tables:   1

The End!