Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013984.1 Corchorus capsularis cultivar CVL-1 contig14005, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67360

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
478--621
31
4.7
31
77
3
114
38
25
18
18
1.92
13043--13092
26
1.9
26
100
0
100
22
8
20
50
1.74
20824--20863
2
20.5
2
89
5
64
50
2
0
47
1.14
38434--38508
30
2.5
31
82
6
91
28
28
17
26
1.98
39257--39321
30
2.1
31
83
8
80
29
13
24
32
1.94
61465--61528
18
3.4
18
77
12
74
35
28
9
26
1.87
61476--61544
21
3.4
21
76
11
90
37
27
10
24
1.88
61465--61541
39
2.0
39
97
0
145
37
24
10
27
1.88
61641--61707
18
3.6
18
78
11
55
40
28
5
25
1.79
65025--65102
33
2.4
33
89
6
115
10
26
42
20
1.84
65026--65078
16
3.2
16
70
15
54
7
28
45
18
1.77

Tables:   1

The End!