Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013985.1 Corchorus capsularis cultivar CVL-1 contig14006, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38010

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--32
2
16.0
2
100
0
64
50
0
0
50
1.00
2052--2639
114
5.1
114
87
3
804
30
16
25
27
1.97
2602--2703
31
3.3
31
93
1
179
20
26
34
18
1.96
2986--3010
13
1.9
13
100
0
50
60
0
8
32
1.26
3022--3165
49
3.0
48
83
10
193
45
4
19
30
1.71
2977--3165
49
3.8
48
80
12
188
46
4
17
31
1.69
2977--3157
97
1.8
99
84
4
251
44
4
17
32
1.70
3536--3580
22
2.0
22
91
0
72
17
11
31
40
1.85
11052--11113
30
2.1
30
100
0
124
40
3
19
37
1.68
12336--12378
18
2.4
18
76
0
50
72
16
4
6
1.24
12347--12395
16
2.9
16
90
6
71
67
14
8
10
1.42
13315--13371
6
10.2
6
76
19
61
29
50
17
1
1.56
13316--13371
16
3.4
17
83
14
64
28
51
17
1
1.56
13315--13370
22
2.5
22
91
5
87
28
51
17
1
1.56
14144--14188
17
2.6
17
89
0
63
22
48
24
4
1.68
14178--14221
16
2.8
16
96
0
79
43
40
13
2
1.57
14353--14380
2
14.0
2
100
0
56
50
0
0
50
1.00
19348--19390
14
3.1
14
78
15
54
44
2
0
53
1.13
21118--21187
22
3.3
22
82
4
81
37
14
11
37
1.82
21131--21269
43
3.3
42
77
10
122
33
12
10
42
1.78
21288--21340
22
2.4
22
83
0
70
32
13
3
50
1.59
21682--21724
14
3.2
13
87
12
61
62
6
0
30
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21682--21726
12
3.5
13
87
9
65
62
8
0
28
1.25
31068--31113
14
3.0
15
77
22
51
30
0
0
69
0.89
33435--33499
31
2.1
31
86
8
89
27
18
4
49
1.67
33634--33717
38
2.2
38
77
6
91
11
19
13
55
1.67
33774--34307
22
24.4
22
67
16
112
40
9
15
34
1.80
33774--33917
44
3.3
44
75
4
130
42
10
14
32
1.80
34034--34465
44
9.9
44
74
9
296
38
9
16
35
1.81
34164--34196
16
2.0
17
88
5
50
36
6
21
36
1.78
34034--34465
22
19.9
22
73
11
252
38
9
16
35
1.81
34022--34617
22
27.5
22
67
15
197
40
9
15
34
1.80
34523--34677
62
2.5
62
91
0
247
43
9
12
34
1.75
37274--37325
26
2.1
26
85
7
72
38
9
1
50
1.46

Tables:   1

The End!