Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013987.1 Corchorus capsularis cultivar CVL-1 contig14008, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132834

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1744--1784
16
2.4
18
80
8
50
34
21
7
36
1.82
5802--6033
87
2.7
84
87
3
311
36
16
4
42
1.70
11319--11374
20
2.6
22
81
13
64
10
39
0
50
1.37
11334--11380
19
2.3
20
79
13
53
12
36
0
51
1.40
15331--15369
21
1.9
20
84
5
51
46
2
2
48
1.29
21261--21299
17
2.4
16
86
4
51
7
2
33
56
1.41
21269--21300
16
1.9
17
93
6
57
6
0
37
56
1.25
23248--23391
69
2.1
70
81
6
168
36
13
17
31
1.89
23793--23822
12
2.5
12
94
0
51
66
26
0
6
1.16
26578--26615
18
2.1
19
90
5
60
26
5
26
42
1.76
26807--26835
13
2.1
14
93
6
51
27
0
13
58
1.36
26802--26844
23
1.9
22
95
4
77
30
0
11
58
1.34
26985--27017
17
2.0
17
88
5
50
30
15
15
39
1.88
27736--27774
18
2.1
19
90
4
62
38
33
17
10
1.84
28012--28099
23
4.0
22
71
14
74
48
12
3
35
1.58
34625--36239
396
4.0
399
83
4
1809
33
18
13
34
1.89
34625--36205
199
7.9
198
82
5
1772
33
18
13
34
1.90
34625--36185
595
2.6
592
83
4
1972
33
18
13
34
1.90
37496--37556
26
2.3
26
80
5
70
31
16
11
40
1.84
38292--38316
3
8.3
3
100
0
50
36
0
0
64
0.94
56579--56614
17
2.1
18
90
10
58
19
0
19
61
1.35
57620--57659
21
2.0
21
85
5
55
37
10
2
50
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58871--58959
45
2.0
45
95
0
160
33
20
21
24
1.97
60081--60136
27
2.0
28
96
3
105
50
7
35
7
1.57
64699--64858
48
3.4
49
83
8
183
12
11
28
47
1.76
65050--65118
29
2.3
29
87
2
93
36
26
13
24
1.92
65435--65469
17
2.1
17
100
0
70
37
5
11
45
1.64
66569--66609
21
2.0
21
95
0
73
24
26
43
4
1.74
66566--66601
10
3.2
12
77
22
51
22
25
47
5
1.73
70671--70709
3
13.0
3
100
0
78
66
0
33
0
0.92
76180--76223
19
2.3
20
76
11
56
20
27
29
22
1.99
77908--77936
2
14.5
2
100
0
58
51
48
0
0
1.00
102908--102967
15
3.7
15
81
16
75
43
8
15
33
1.76
112631--112658
2
14.0
2
100
0
56
50
0
0
50
1.00
117580--117613
17
2.1
16
94
5
59
0
8
0
91
0.43

Tables:   1

The End!