Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013989.1 Corchorus capsularis cultivar CVL-1 contig14010, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74797

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3247--3322
38
2.0
38
100
0
152
18
7
31
42
1.79
5597--5633
2
18.5
2
88
0
56
45
2
2
48
1.30
15355--15393
20
2.0
20
100
0
78
58
10
0
30
1.31
15967--16035
26
2.6
25
86
11
84
40
13
8
37
1.75
18806--18838
3
11.0
3
93
0
57
63
0
3
33
1.10
27994--28032
7
5.9
7
82
11
55
56
0
2
41
1.13
27994--28030
19
1.9
19
94
0
65
56
0
2
40
1.13
28786--28926
74
1.9
76
89
4
223
29
7
24
38
1.83
31353--31382
13
2.3
13
100
0
60
13
36
16
33
1.88
34140--34233
33
2.9
33
85
1
136
25
27
18
28
1.98
40000--40111
55
2.1
54
89
1
170
21
8
8
61
1.51
46682--46733
17
3.1
17
80
0
59
28
13
30
26
1.94
47151--47442
150
1.9
153
84
8
398
34
21
14
30
1.92
47071--47462
156
2.6
151
79
11
431
34
20
14
30
1.93
47327--47593
142
1.9
136
82
7
331
35
20
14
29
1.92
50456--50569
56
2.1
56
90
5
178
23
7
8
59
1.53
51385--51422
19
2.1
19
85
5
51
15
10
21
52
1.72
54977--55089
56
2.0
56
98
0
217
22
38
4
35
1.74
55355--55415
18
3.3
18
70
4
50
32
1
14
50
1.53
55342--55415
37
2.0
37
94
0
130
32
2
16
48
1.60
55342--55397
18
3.0
19
68
5
60
32
3
16
48
1.63
57906--57942
3
12.3
3
100
0
74
67
0
0
32
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58980--59022
22
2.0
22
100
0
86
30
46
13
9
1.75
64987--65017
16
1.9
16
93
0
53
35
6
0
58
1.24
67211--67242
3
10.7
3
100
0
64
68
0
31
0
0.90

Tables:   1

The End!