Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013990.1 Corchorus capsularis cultivar CVL-1 contig14011, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51455

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7561--7699
34
4.2
34
90
2
221
28
22
26
23
1.99
12975--13123
44
3.4
44
78
4
156
38
12
15
33
1.85
12956--13125
22
7.7
22
77
7
139
39
12
15
32
1.84
13237--13288
22
2.4
22
83
6
61
46
7
9
36
1.66
13254--13313
22
2.8
21
87
5
75
40
6
15
38
1.73
13393--13445
22
2.4
22
93
0
88
33
5
20
39
1.76
13581--13638
20
2.9
20
85
10
66
36
8
18
36
1.82
13475--13976
22
22.5
22
66
16
151
37
9
18
34
1.83
13849--13974
65
2.0
64
83
10
159
36
7
18
38
1.78
16386--16452
31
2.2
31
94
0
116
52
14
8
23
1.70
17314--17346
6
5.5
6
100
0
66
33
36
0
30
1.58
17681--17790
54
2.1
54
86
5
152
59
9
8
23
1.55
20033--20102
27
2.6
27
86
2
97
64
11
14
10
1.50
33421--33451
12
2.7
11
95
5
53
6
9
22
61
1.50
33721--33754
13
2.5
14
85
9
52
58
0
0
41
0.98
34531--34696
31
5.4
31
81
0
179
33
24
23
18
1.97
34535--34696
62
2.6
62
84
0
207
33
25
22
18
1.96
37094--37237
50
3.3
41
75
18
128
42
11
6
38
1.69
38821--38881
30
2.0
30
100
0
122
22
26
6
44
1.77
39861--39885
13
1.9
13
100
0
50
48
20
0
32
1.50
43781--43808
12
2.3
12
100
0
56
39
0
25
35
1.56
45530--45642
55
2.0
56
93
1
192
61
9
7
21
1.50

Tables:   1

The End!