genome.fa.s13997.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013997.1 Corchorus capsularis cultivar CVL-1 contig14018, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99154

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7290--7414	23	5.4	24	81	8	152	28	33	18	19	1.95
7290--7414	46	2.7	45	90	2	187	28	33	18	19	1.95
10574--10792	38	5.8	37	90	2	339	28	30	22	18	1.97
10574--10792	75	2.9	75	93	1	359	28	30	22	18	1.97
11341--11539	46	4.3	46	89	0	272	29	39	17	13	1.88
11339--11523	23	8.0	23	87	0	235	30	38	17	13	1.88
11582--11700	26	4.5	26	77	8	125	26	41	16	15	1.88
11580--11622	13	3.3	13	76	23	54	23	48	13	13	1.79
11927--12081	23	6.7	23	81	4	161	27	38	18	15	1.91
12124--12241	26	4.5	26	69	12	71	27	38	16	17	1.91
17799--17842	22	2.0	22	86	8	63	40	11	4	43	1.61
17856--17910	22	2.5	22	85	5	67	38	9	9	43	1.68
18170--18227	23	2.5	23	91	0	89	43	13	5	37	1.67
17944--18416	22	21.6	22	68	13	176	36	16	9	37	1.82
18522--18741	22	9.8	22	73	11	144	34	14	9	42	1.77
18497--18755	22	11.7	22	74	12	131	33	13	9	42	1.77
18903--19051	22	6.7	22	71	16	94	36	11	10	40	1.76
18984--19032	25	1.9	26	87	4	73	34	12	8	44	1.71
18903--19201	22	13.4	22	67	17	86	36	14	9	39	1.79
19105--19234	22	5.9	22	73	10	68	36	16	8	38	1.80
19320--19368	22	2.2	22	96	0	89	32	18	14	34	1.91
20981--21096	30	3.8	31	74	11	105	47	1	12	38	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24745--24772	2	14.0	2	100	0	56	50	0	0	50	1.00
25609--25653	21	2.1	22	83	4	56	15	31	8	44	1.77
33568--33597	2	14.5	2	93	6	51	50	3	0	46	1.18
35214--35251	19	2.1	19	90	5	60	81	0	10	7	0.87
45966--46013	24	2.0	24	83	0	60	22	50	4	22	1.67
49513--49557	2	22.0	2	95	4	81	48	2	0	48	1.13
54049--54090	22	1.9	22	100	0	84	35	7	14	42	1.73
67044--67098	25	2.2	26	83	3	67	38	9	12	40	1.75
68083--68158	30	2.5	31	87	6	102	18	23	23	34	1.96
73609--73652	23	1.9	23	81	9	54	47	9	4	38	1.56
82092--82129	6	6.3	6	100	0	76	84	0	0	15	0.63
88746--88776	11	2.8	11	90	0	53	12	0	16	70	1.16
88746--88787	22	1.9	22	85	0	57	14	0	16	69	1.20
90685--90724	21	1.9	21	89	0	62	5	47	17	30	1.69
91196--91230	18	1.9	18	88	0	52	22	37	2	37	1.69
95555--96257	220	3.2	219	92	2	1110	36	21	7	35	1.82
95556--96257	218	3.2	217	92	1	1102	36	21	7	35	1.82
96289--96351	11	5.0	11	74	25	54	68	4	7	19	1.33
96703--96739	2	18.5	2	94	0	65	51	2	0	45	1.15
96773--96807	2	17.5	2	93	0	61	51	2	0	45	1.16
97478--97528	22	2.3	22	82	0	57	37	11	11	39	1.79
97541--97582	22	1.9	22	85	9	59	33	7	4	54	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97890--97928	13	2.9	13	82	17	53	46	0	0	53	1.00
97896--97928	15	2.4	14	90	10	50	48	0	0	51	1.00

Tables:   1

The End!