genome.fa.s13998.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013998.1 Corchorus capsularis cultivar CVL-1 contig14019, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114900

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
306--371	31	2.1	32	83	5	82	50	6	15	28	1.67
400--540	2	70.0	2	72	6	88	43	7	5	42	1.57
3051--3244	96	2.0	96	96	0	361	28	17	14	39	1.90
9917--9943	12	2.2	12	100	0	54	59	0	14	25	1.36
11999--12466	72	6.5	72	77	6	313	29	18	24	27	1.98
12070--12466	144	2.8	144	79	3	458	29	18	24	27	1.98
11999--12513	216	2.4	216	78	5	515	28	18	24	27	1.98
15550--15635	42	2.0	45	82	13	108	39	3	10	46	1.55
19951--20158	72	2.9	72	84	0	263	30	19	24	25	1.98
20259--20572	72	4.4	72	76	10	275	28	18	24	28	1.98
20259--20572	144	2.2	144	80	7	336	28	18	24	28	1.98
22186--22235	17	2.9	17	96	0	91	40	28	8	24	1.83
22682--22747	31	2.1	32	88	5	98	60	13	0	25	1.33
24172--24198	1	27.0	1	100	0	54	100	0	0	0	0.00
40463--40487	13	1.9	13	100	0	50	16	16	24	44	1.86
41635--41674	19	2.1	19	100	0	80	42	10	10	37	1.72
43331--43365	2	17.5	2	93	0	61	48	0	2	48	1.16
45059--45124	33	2.0	33	100	0	132	33	9	27	30	1.88
46731--46761	5	6.2	5	92	0	53	58	19	3	19	1.53
58396--58438	11	3.9	11	90	0	68	46	6	4	41	1.51
58392--58438	22	2.1	22	96	0	85	46	6	4	42	1.48
83934--83959	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90983--91021	2	19.5	2	100	0	78	51	0	48	0	1.00
92995--93041	22	2.1	22	84	0	58	36	10	14	38	1.81
93026--93147	22	5.5	22	74	10	81	40	7	9	42	1.64
93026--93173	66	2.2	66	80	9	160	38	6	10	43	1.66
94588--94625	17	2.2	17	90	0	58	28	2	39	28	1.70
113848--113963	57	2.0	57	91	0	187	47	0	12	38	1.48

Tables:   1

The End!