Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01001400.1 Corchorus capsularis cultivar CVL-1 contig01400, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6321

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--170
49
3.5
48
85
7
218
21
30
16
31
1.95
3--170
46
3.5
46
86
5
212
21
30
16
31
1.95
2252--2291
12
3.3
12
85
0
62
32
5
45
17
1.70
4564--4613
26
1.9
26
84
8
66
16
14
28
42
1.86
4767--4883
53
2.2
53
92
0
189
19
16
25
38
1.92
5225--5519
77
3.7
77
82
11
358
22
28
26
23
1.99
5367--5391
12
2.1
12
100
0
50
44
24
32
0
1.54
5290--5468
89
2.0
89
93
0
304
25
27
26
19
1.99
5561--5720
83
1.9
83
87
2
232
20
25
30
25
1.99
5641--5886
115
2.1
116
79
5
275
23
23
26
26
2.00
5860--5959
38
2.6
38
87
0
137
26
21
34
19
1.96

Tables:   1

The End!