Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014001.1 Corchorus capsularis cultivar CVL-1 contig14022, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6180
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.32


Found at i:1709 original size:13 final size:13

Alignment explanation


    Indices: 1671--1711  Score: 55
    Period size: 13  Copynumber: 3.2  Consensus size: 13

       1661 TGCGCGGACA

                     *  *
       1671 GCACCCATGACAA
          1 GCACCCATGCCAT

                    *    
       1684 GCACCCATCCCAT
          1 GCACCCATGCCAT

                         
       1697 GCACCCATGCCAT
          1 GCACCCATGCCAT

              
       1710 GC
          1 GC

       1712 CGATGTCACC


Statistics
Matches: 24,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  13   24  1.00

ACGTcount: A:0.27, C:0.46, G:0.15, T:0.12


Consensus pattern (13 bp):   
GCACCCATGCCAT
Done.