Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014003.1 Corchorus capsularis cultivar CVL-1 contig14024, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64689

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
660--685
12
2.2
12
100
0
52
23
7
7
61
1.49
1048--1086
17
2.3
17
86
0
51
20
10
23
46
1.81
2144--2175
16
1.9
17
93
6
57
78
6
0
15
0.95
3956--3991
18
2.0
18
94
0
63
27
25
0
47
1.52
3958--3998
18
2.3
18
86
0
55
26
26
2
43
1.67
4433--4462
2
15.0
2
100
0
60
50
0
0
50
1.00
4466--4766
22
13.9
21
73
15
163
55
5
20
17
1.62
4483--4659
67
2.7
66
78
10
168
55
5
20
18
1.61
4610--4760
43
3.5
43
81
5
153
57
5
19
16
1.59
4695--4766
15
4.9
14
77
5
63
61
4
19
15
1.50
4739--4788
15
3.4
15
83
5
66
56
4
22
18
1.58
4710--4780
37
1.9
37
85
5
99
59
4
21
15
1.53
4607--4766
7
22.3
7
68
9
72
58
5
20
16
1.58
4743--4790
14
3.4
14
85
2
60
56
4
22
16
1.58
4750--4873
47
2.6
48
77
14
128
59
5
19
15
1.55
4882--4922
19
2.2
19
95
0
73
68
0
19
12
1.21
4773--4925
82
1.9
82
83
8
204
62
3
18
15
1.48
4981--5014
17
2.1
16
88
5
50
32
26
23
17
1.97
5200--5340
22
6.7
20
83
6
88
51
4
19
23
1.66
5225--5368
22
6.6
22
82
10
156
55
3
20
20
1.58
5225--5441
44
5.2
44
72
19
169
55
3
20
20
1.59
5314--5404
36
2.5
36
90
1
137
58
2
23
16
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5381--5441
22
2.8
22
80
9
61
57
3
19
19
1.54
8724--8812
45
2.0
45
91
4
144
26
23
16
32
1.96
9170--9330
33
4.9
33
83
3
182
16
40
31
11
1.85
9166--9325
65
2.4
66
81
7
191
17
40
29
13
1.87
14421--14510
45
2.0
45
86
0
126
27
21
16
34
1.95
28246--28270
3
8.3
3
100
0
50
0
36
0
64
0.94
38704--38786
44
1.9
43
87
2
121
30
18
20
31
1.96
42354--42434
30
2.7
27
80
17
81
0
23
1
75
0.88
42404--42446
12
3.3
13
87
6
61
0
25
0
74
0.82
50728--50804
39
2.1
38
87
7
113
40
27
6
25
1.80
51983--52022
21
1.9
21
85
10
55
15
15
47
22
1.82
52168--52223
24
2.3
24
90
0
85
25
5
62
7
1.42
57360--57400
13
3.2
13
89
6
57
51
0
21
26
1.48
60506--60575
24
3.0
23
83
8
97
25
31
22
20
1.98
60555--60585
15
2.1
15
93
0
53
32
32
19
16
1.94

Tables:   1

The End!