Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014004.1 Corchorus capsularis cultivar CVL-1 contig14025, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31461

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4381--4466
45
1.9
45
83
4
111
38
15
11
34
1.83
4337--4722
22
17.6
22
69
14
142
36
15
10
37
1.83
4506--4598
23
4.1
23
77
5
82
40
13
10
34
1.80
4516--4620
45
2.3
46
81
4
115
39
13
10
37
1.79
4547--4620
23
3.3
23
84
1
96
36
16
8
39
1.78
4742--4800
22
2.7
22
86
5
75
42
6
11
38
1.68
4901--5095
22
8.8
22
72
7
103
34
11
10
43
1.76
4898--5050
66
2.3
66
80
4
175
34
13
11
41
1.79
5032--5115
21
3.7
24
85
13
108
34
10
10
44
1.74
4964--5115
22
6.9
22
74
16
109
34
11
11
42
1.77
5170--5293
22
5.7
22
73
12
76
36
16
9
37
1.82
5149--5273
65
1.9
66
82
14
161
36
17
8
37
1.79
5329--5536
22
9.4
22
71
13
115
39
16
9
34
1.81
5406--5533
44
2.9
44
82
4
134
36
14
11
36
1.83
5700--5737
19
2.0
20
85
15
53
63
2
5
28
1.30
5810--5858
25
2.0
24
84
4
62
53
2
0
44
1.12
7139--7201
31
2.0
31
96
0
117
49
3
14
33
1.59
8266--8379
54
2.1
54
87
6
160
14
19
32
33
1.92
9197--9230
16
2.1
16
100
0
68
47
17
23
11
1.81
18143--18182
21
1.9
21
85
10
55
15
10
15
60
1.60
18749--18834
2
43.0
2
100
0
172
50
0
50
0
1.00
19542--19574
12
2.6
13
95
4
59
36
0
0
63
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19625--19674
26
2.0
26
84
11
68
54
8
2
36
1.42
19726--19791
32
2.2
29
84
10
80
39
3
1
56
1.24
26149--26185
2
19.0
2
88
5
58
45
2
0
51
1.15
26147--26182
17
2.1
17
94
0
63
44
2
0
52
1.15
27705--27765
19
3.0
21
85
9
90
36
4
9
49
1.58
29636--29928
108
2.7
109
88
6
421
50
2
11
36
1.50

Tables:   1

The End!