genome.fa.s14005.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014005.1 Corchorus capsularis cultivar CVL-1 contig14026, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110983

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1121--1181	20	3.0	20	86	9	72	50	6	0	42	1.28
3287--3334	20	2.4	19	80	13	51	18	4	6	70	1.25
3310--3343	16	2.1	16	89	10	52	14	0	5	79	0.91
17945--17969	7	3.6	7	100	0	50	12	12	44	32	1.78
23001--24565	200	8.0	198	83	6	1771	34	17	12	34	1.88
23002--24565	393	4.0	393	83	6	1833	34	17	12	34	1.88
25980--26016	14	2.8	13	88	8	56	62	0	0	37	0.96
25988--26033	19	2.3	19	85	11	56	65	0	4	30	1.12
27998--28257	107	2.5	105	92	2	425	41	9	9	40	1.69
31088--31139	23	2.2	24	93	3	88	13	13	25	48	1.79
31910--32069	77	2.1	76	86	9	218	51	0	10	36	1.41
40150--40264	60	1.9	60	82	7	144	33	12	12	41	1.79
46397--46453	28	2.1	28	86	3	80	15	31	7	45	1.73
47106--47141	18	2.0	18	100	0	72	33	11	11	44	1.75
47868--47914	12	3.9	12	82	0	58	44	27	12	14	1.82
47868--47914	24	2.0	24	87	8	69	44	27	12	14	1.82
47865--47923	12	4.9	12	79	8	57	45	27	10	16	1.80
53819--53857	20	2.0	20	94	0	69	33	7	25	33	1.84
53836--53937	33	3.1	33	69	18	93	29	7	21	41	1.81
53858--53915	18	3.3	18	67	26	52	31	5	22	41	1.76
54182--54246	30	2.2	30	83	5	78	15	24	15	44	1.85
54191--54251	33	1.9	30	87	9	86	16	21	16	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58249--58309	30	2.0	30	87	6	88	14	22	13	49	1.78
61618--61659	21	2.0	21	90	0	66	21	19	11	47	1.81
62235--62441	104	2.0	104	84	3	274	34	13	18	33	1.90
62699--62740	21	2.0	21	85	0	57	23	16	9	50	1.75
69738--70154	226	1.8	227	89	3	662	28	19	18	34	1.95
70191--70220	15	2.0	15	93	0	51	30	0	33	36	1.58
71219--71275	11	5.4	11	78	17	59	61	0	1	36	1.07
71231--71271	19	2.2	18	91	8	64	63	0	2	34	1.08
71657--71691	18	1.9	18	94	0	61	37	28	8	25	1.85
72058--72089	14	2.2	15	94	5	57	31	6	21	40	1.78
84201--84296	38	2.6	37	86	3	147	13	19	11	55	1.68
84354--84406	22	2.4	22	81	12	65	43	9	11	35	1.73
84413--84487	22	3.4	22	81	7	73	41	9	14	34	1.78
84557--84851	22	13.6	22	73	11	162	39	9	15	35	1.79
84816--84862	22	2.1	22	88	0	67	36	10	12	40	1.78
84985--85032	22	2.2	22	85	3	62	54	4	14	27	1.59
85060--85209	60	2.5	62	87	4	223	44	9	12	34	1.75
86263--86309	18	2.6	18	93	0	76	57	6	27	8	1.53
91193--91218	13	2.0	13	100	0	52	46	0	15	38	1.46
92857--92885	2	14.5	2	100	0	58	51	0	0	48	1.00
92829--92863	16	2.2	16	100	0	70	45	17	11	25	1.81
97105--97136	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100040--100066	12	2.2	12	100	0	54	55	0	14	29	1.40
100109--100318	105	2.0	105	99	0	411	21	31	13	32	1.92
105747--106430	35	19.8	35	80	8	620	39	8	18	33	1.82
108639--108672	11	3.2	10	84	15	50	29	2	17	50	1.61
109674--110282	22	28.0	22	68	12	217	35	15	9	39	1.80
109805--109890	45	1.9	45	82	0	109	37	16	12	33	1.87
109940--110044	46	2.3	47	82	11	130	38	14	9	38	1.78
109960--110066	23	4.7	23	83	4	112	36	14	8	40	1.77
109960--110066	45	2.4	46	85	3	146	36	14	8	40	1.77
110359--110464	44	2.4	44	81	6	126	34	12	10	42	1.77
110292--110441	22	6.9	21	70	17	85	34	12	10	42	1.78
110359--110489	22	5.9	22	72	9	79	33	12	10	42	1.78
110548--110905	22	16.5	21	70	14	171	36	18	9	35	1.84
110548--110905	44	8.3	43	70	13	193	36	18	9	35	1.84

Tables:   1

The End!