Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014007.1 Corchorus capsularis cultivar CVL-1 contig14028, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52045

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
538--615
34
2.3
34
100
0
156
28
10
10
51
1.68
1658--1755
42
2.3
42
85
7
126
36
25
8
29
1.85
2002--2037
12
2.8
13
83
8
56
33
2
38
25
1.70
3019--3076
22
2.8
21
71
7
64
43
12
10
34
1.76
6820--6872
27
2.0
27
88
0
79
18
18
20
41
1.91
11167--11217
22
2.4
21
75
21
52
70
13
1
13
1.25
18247--18297
26
1.9
27
84
11
70
68
0
0
31
0.90
18249--18297
17
2.8
17
84
3
62
71
0
0
28
0.86
19438--19471
17
2.0
17
94
0
59
32
0
0
67
0.91
25576--25624
3
16.3
3
100
0
98
0
32
0
67
0.91
30310--30341
3
10.7
3
100
0
64
31
0
0
68
0.90
32284--32324
21
2.0
21
95
0
73
4
24
26
43
1.74
35410--35538
22
5.5
24
72
17
74
31
11
9
48
1.71
38647--38753
29
3.6
29
76
8
90
16
28
16
38
1.91
38770--38917
32
4.6
32
97
0
278
21
31
29
18
1.97
38978--39049
29
2.4
30
81
2
92
34
15
31
18
1.92
50749--50861
53
2.2
52
93
1
190
54
12
10
22
1.67
50770--50888
51
2.3
54
80
12
133
55
11
11
21
1.67

Tables:   1

The End!