Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014009.1 Corchorus capsularis cultivar CVL-1 contig14030, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71977

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14091--14372
140
2.0
140
100
0
564
40
18
16
25
1.91
19344--19433
45
2.0
45
93
0
153
33
16
23
26
1.96
19806--19899
2
51.5
2
69
24
57
47
0
3
48
1.17
19977--20418
165
2.7
166
82
5
529
30
14
15
40
1.86
27782--27961
91
2.0
91
94
0
315
30
13
23
32
1.93
30913--30942
3
10.0
3
92
0
51
63
0
0
36
0.95
44423--44496
38
1.9
38
97
0
139
28
20
14
36
1.92
51972--52067
38
2.6
37
86
3
147
13
19
11
55
1.68
52125--52177
22
2.4
22
81
12
65
43
9
11
35
1.73
52184--52228
22
2.0
22
87
8
65
40
8
20
31
1.83
52328--52493
22
7.3
23
69
15
80
43
8
14
33
1.76
52328--52455
45
2.9
44
81
11
129
42
8
12
36
1.74
52378--52606
22
10.5
22
73
10
114
41
9
16
33
1.80
52499--52623
45
2.8
45
77
8
128
38
9
16
36
1.81
52591--52650
22
2.7
22
79
5
68
36
13
11
38
1.81
52760--52807
21
2.2
22
85
3
62
54
2
14
29
1.52
52835--52984
60
2.4
61
88
4
230
43
9
14
33
1.77
53074--53169
38
2.6
37
85
3
129
14
18
11
55
1.69
53607--53644
19
2.0
20
85
15
53
28
5
2
63
1.30
53811--53939
22
5.9
21
83
6
132
35
9
16
38
1.81
53811--54933
44
25.4
43
65
21
213
37
9
16
36
1.82
53809--53940
66
2.0
66
82
8
162
34
9
16
39
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53810--53993
22
8.3
22
75
14
87
33
8
16
41
1.78
54058--54356
22
13.4
22
69
18
86
38
10
15
36
1.80
54191--54357
22
7.6
22
75
11
123
41
10
13
34
1.79
54472--54541
20
3.4
20
82
4
77
41
11
17
30
1.84
54507--54756
22
11.6
22
69
13
103
40
10
14
34
1.80
54482--54933
22
20.8
21
68
11
98
37
10
16
35
1.83
54488--54608
65
1.9
64
84
5
163
43
10
14
30
1.80
54571--54688
60
2.0
60
86
3
166
41
7
14
36
1.74
54653--54726
23
3.3
23
86
1
105
37
8
16
37
1.78
54487--54726
43
5.6
44
74
11
131
40
9
16
33
1.80
54653--54767
23
5.1
22
80
9
81
37
9
16
36
1.81
60325--60362
20
1.9
19
94
5
67
23
10
0
65
1.23
60429--60534
22
4.7
22
73
15
92
35
9
16
38
1.81
60430--60534
44
2.3
44
81
12
108
36
9
16
38
1.81
60600--60729
22
6.0
21
70
13
84
34
7
19
38
1.80
61052--61235
22
8.3
22
71
15
94
41
10
14
33
1.79
61240--61659
22
19.4
22
66
13
108
37
10
16
36
1.82
61465--61521
23
2.5
22
85
2
69
31
12
15
40
1.85
61779--61803
2
12.5
2
100
0
50
48
0
0
52
1.00
62253--62310
28
2.1
28
100
0
116
46
13
15
24
1.82
62833--62879
22
2.1
22
100
0
94
53
0
17
29
1.44
63921--63956
12
3.0
12
95
0
63
33
27
16
22
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64052--64082
9
3.4
9
90
0
53
45
29
0
25
1.54
65793--65818
2
13.0
2
100
0
52
50
0
0
50
1.00
67201--67251
27
1.9
26
84
4
66
68
1
0
29
1.00
70841--71846
439
2.3
439
84
3
1260
30
13
12
43
1.81

Tables:   1

The End!