Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014012.1 Corchorus capsularis cultivar CVL-1 contig14033, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33982

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3458--3959
72
7.0
72
87
0
702
27
24
32
15
1.96
6800--6837
3
12.7
3
100
0
76
68
0
0
31
0.90
8257--8406
79
1.9
78
95
1
273
20
28
30
21
1.98
26317--26359
3
14.3
3
85
0
50
30
25
6
37
1.82
27885--27915
2
15.5
2
93
0
53
48
0
3
48
1.17
28630--28675
25
2.0
23
84
16
60
21
13
13
52
1.73
28689--28759
21
3.3
21
78
7
79
28
11
7
53
1.62
28873--28918
18
2.6
18
96
0
83
15
13
21
50
1.78
28997--29063
21
3.3
21
67
23
54
35
7
5
50
1.55
29166--29346
86
2.1
87
87
3
258
34
11
7
47
1.66
29178--29359
85
2.1
86
85
3
242
34
11
7
46
1.67
29408--29445
20
1.9
20
89
10
60
34
7
10
47
1.67
29907--29945
20
2.0
20
84
0
51
33
7
10
48
1.66
30058--30107
21
2.4
20
80
9
64
32
12
12
44
1.78
30066--30158
21
4.5
20
68
24
59
30
11
11
46
1.76
31501--31538
10
4.0
10
90
6
53
52
7
0
39
1.31
33632--33662
2
15.5
2
100
0
62
48
0
0
51
1.00

Tables:   1

The End!