Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01014014.1 Corchorus capsularis cultivar CVL-1 contig14035, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12856
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Found at i:51 original size:2 final size:2
Alignment explanation
Indices: 3--35 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1 AC
3 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
36 TAAGAATTAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:149 original size:2 final size:2
Alignment explanation
Indices: 142--167 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
132 ATTGCTAATG
142 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
168 TTGATAGAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1180 original size:15 final size:15
Alignment explanation
Indices: 1150--1194 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 15
1140 GATAAAACTG
**
1150 AAAATTAAGTGCTGA
1 AAAATTAAGTATTGA
1165 AAAATTAAGTATTG-
1 AAAATTAAGTATTGA
*
1179 AAAATTTAGTATTGA
1 AAAATTAAGTATTGA
1194 A
1 A
1195 TCTTATAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
14 13 0.50
15 13 0.50
ACGTcount: A:0.49, C:0.02, G:0.16, T:0.33
Consensus pattern (15 bp):
AAAATTAAGTATTGA
Found at i:1943 original size:13 final size:13
Alignment explanation
Indices: 1925--1949 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1915 CGGTCCCGAA
1925 ATATATATATATT
1 ATATATATATATT
1938 ATATATATATAT
1 ATATATATATAT
1950 ATTAATATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATATATATATATT
Found at i:1945 original size:15 final size:14
Alignment explanation
Indices: 1924--1957 Score: 59
Period size: 15 Copynumber: 2.4 Consensus size: 14
1914 CCGGTCCCGA
1924 AATATATATATATT
1 AATATATATATATT
1938 ATATATATATATATT
1 A-ATATATATATATT
1953 AATAT
1 AATAT
1958 TAATACATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
AATATATATATATT
Found at i:2064 original size:20 final size:20
Alignment explanation
Indices: 2039--2097 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
2029 ATATATGTTT
2039 TACTAATAAATAATAATATA
1 TACTAATAAATAATAATATA
*
2059 TACTAATAAAT-A-AATATT
1 TACTAATAAATAATAATATA
* *
2077 TACTAATTTACTAATAATATA
1 TACTAA-TAAATAATAATATA
2098 AATATATATT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
18 11 0.34
19 4 0.12
20 12 0.38
21 5 0.16
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (20 bp):
TACTAATAAATAATAATATA
Found at i:8984 original size:18 final size:18
Alignment explanation
Indices: 8950--8985 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
8940 TCTTGCACAT
* *
8950 GATTAGGAGTTGTTGACA
1 GATTAGGAGCTGCTGACA
8968 GATTAGGAGCTGCTGACA
1 GATTAGGAGCTGCTGACA
8986 AAAATGATGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.28, C:0.11, G:0.33, T:0.28
Consensus pattern (18 bp):
GATTAGGAGCTGCTGACA
Found at i:9617 original size:108 final size:108
Alignment explanation
Indices: 9411--9643 Score: 319
Period size: 108 Copynumber: 2.2 Consensus size: 108
9401 CGTAGCTAAA
* * * *
9411 AGTGCCTTTCCTT-TTGTTGATTCTGGCTTATGTAGCCCATTAAAAATCTATATTTTGACTTGGA
1 AGTGCCCTTCCTTGTTGATGATTCTAGCCTATGTAGCCCATTAAAAATCTATATTTTGACTTGGA
* *
9475 GTGAGTCCACCCATAGGAGTGCTACACTGGTTGCACCTCCAGG
66 GAGAGTCCACCCATAGGAGTGCTACACTGATTGCACCTCCAGG
*
9518 AGTGCCCTTCCTTGTTGATGATTCTAGCCTATGTAGCCTATTAAAAAAT-TATATTTTGACTTGG
1 AGTGCCCTTCCTTGTTGATGATTCTAGCCTATGTAGCCCATT-AAAAATCTATATTTTGACTTGG
* * * *
9582 AGCAG-GTGCACCCTTAGGAGTGTTGCACTGATTGCACCTCCAGG
65 AG-AGAGTCCACCCATAGGAGTGCTACACTGATTGCACCTCCAGG
*
9626 AGTGCCCCTCCTTGTTGA
1 AGTGCCCTTCCTTGTTGA
9644 CGCCTATAGC
Statistics
Matches: 111, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
107 12 0.11
108 92 0.83
109 7 0.06
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.34
Consensus pattern (108 bp):
AGTGCCCTTCCTTGTTGATGATTCTAGCCTATGTAGCCCATTAAAAATCTATATTTTGACTTGGA
GAGAGTCCACCCATAGGAGTGCTACACTGATTGCACCTCCAGG
Found at i:9672 original size:108 final size:109
Alignment explanation
Indices: 9452--9673 Score: 286
Period size: 108 Copynumber: 2.0 Consensus size: 109
9442 GTAGCCCATT
* *
9452 AAAAATCTATATTTTGACTTGGAGTGAGTCCACCCATAGGAGTGCTACACTGGTTGCACCTCCAG
1 AAAAATCTATATTTTGACTTGGAGAGAGTCCACCCATAGGAGTGCTACACTGATTGCACCTCCAG
* * * * * **
9517 GAGTGCCCTTCCTTGTTGATGATTCTAGCCTATGTAGCCTATTA
66 GAGTGCCCCTCCTTGTTGACGACTATAGCCTATGCAGCCTAAAA
* * * *
9561 AAAAAT-TATATTTTGACTTGGAGCAG-GTGCACCCTTAGGAGTGTTGCACTGATTGCACCTCCA
1 AAAAATCTATATTTTGACTTGGAG-AGAGTCCACCCATAGGAGTGCTACACTGATTGCACCTCCA
* *
9624 GGAGTGCCCCTCCTTGTTGACGCCTATAGCCTATGCAGCTTAAAA
65 GGAGTGCCCCTCCTTGTTGACGACTATAGCCTATGCAGCCTAAAA
9669 AAAAA
1 AAAAA
9674 GGCTTACAAT
Statistics
Matches: 97, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
108 90 0.93
109 7 0.07
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (109 bp):
AAAAATCTATATTTTGACTTGGAGAGAGTCCACCCATAGGAGTGCTACACTGATTGCACCTCCAG
GAGTGCCCCTCCTTGTTGACGACTATAGCCTATGCAGCCTAAAA
Found at i:9808 original size:41 final size:40
Alignment explanation
Indices: 9645--9944 Score: 299
Period size: 41 Copynumber: 7.5 Consensus size: 40
9635 CCTTGTTGAC
9645 GCCTATAGCCTATGCAGCTT-AAAAAAAAAGGCTTACAAT
1 GCCTATAGCCTATGCAGCTTAAAAAAAAAAGGCTTACAAT
* *
9684 GCCTATAGCCTATGTAGCTTAAAAAGAAAAGGCTTACAAT
1 GCCTATAGCCTATGCAGCTTAAAAAAAAAAGGCTTACAAT
* * * * * ** *
9724 GCCTATAGCCAATGTAGCTT---GAAAGAGGGCGCACAAC
1 GCCTATAGCCTATGCAGCTTAAAAAAAAAAGGCTTACAAT
9761 GCCTATAGCCTATGCAGCTTAAAAAAAAAGAGGCTTACAAT
1 GCCTATAGCCTATGCAGCTTAAAAAAAAA-AGGCTTACAAT
*
9802 GCCTATAGCCTATGAAGCTTAAAAAGAAAAAGGCTTACAAT
1 GCCTATAGCCTATGCAGCTTAAAAA-AAAAAGGCTTACAAT
* * * * * * *
9843 GCCTATAGCCAATGTAGCTT---GAAAGAGGGCGTACAAC
1 GCCTATAGCCTATGCAGCTTAAAAAAAAAAGGCTTACAAT
*
9880 GCCTATAGCCTATGCAGCTTTAAAAAAAAACAAAAGGCTTACTAT
1 GCCTATAGCCTATGCAGC-TT---AAAAAA-AAAAGGCTTACAAT
* *
9925 GCCTACAGCCTTTGCAGCTT
1 GCCTATAGCCTATGCAGCTT
9945 TACAACGCCT
Statistics
Matches: 211, Mismatches: 36, Indels: 23
0.78 0.13 0.09
Matches are distributed among these distances:
37 55 0.26
38 3 0.01
39 19 0.09
40 41 0.19
41 60 0.28
42 4 0.02
44 4 0.02
45 25 0.12
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.22
Consensus pattern (40 bp):
GCCTATAGCCTATGCAGCTTAAAAAAAAAAGGCTTACAAT
Found at i:9809 original size:78 final size:77
Alignment explanation
Indices: 9679--9821 Score: 232
Period size: 77 Copynumber: 1.8 Consensus size: 77
9669 AAAAAGGCTT
* * * *
9679 ACAATGCCTATAGCCTATGTAGCTTAAAAAGAAAAGGCTTACAATGCCTATAGCCAATGTAGCTT
1 ACAACGCCTATAGCCTATGCAGCTTAAAAAAAAAAGGCTTACAATGCCTATAGCCAATGAAGCTT
9744 GAAAGAGGGCGC
66 GAAAGAGGGCGC
*
9756 ACAACGCCTATAGCCTATGCAGCTTAAAAAAAAAGAGGCTTACAATGCCTATAGCCTATGAAGCT
1 ACAACGCCTATAGCCTATGCAGCTTAAAAAAAAA-AGGCTTACAATGCCTATAGCCAATGAAGCT
9821 T
65 T
9822 AAAAAGAAAA
Statistics
Matches: 60, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
77 31 0.52
78 29 0.48
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.22
Consensus pattern (77 bp):
ACAACGCCTATAGCCTATGCAGCTTAAAAAAAAAAGGCTTACAATGCCTATAGCCAATGAAGCTT
GAAAGAGGGCGC
Found at i:9869 original size:119 final size:117
Alignment explanation
Indices: 9643--9909 Score: 482
Period size: 119 Copynumber: 2.3 Consensus size: 117
9633 CTCCTTGTTG
*
9643 ACGCCTATAGCCTATGCAGCTT-AAAAAAAAAGGCTTACAATGCCTATAGCCTATGTAGCTTAAA
1 ACGCCTATAGCCTATGCAGCTTAAAAAAAAAAGGCTTACAATGCCTATAGCCTATGAAGCTTAAA
9707 AAGAAAAGGCTTACAATGCCTATAGCCAATGTAGCTTGAAAGAGGGCGCACA
66 AAGAAAAGGCTTACAATGCCTATAGCCAATGTAGCTTGAAAGAGGGCGCACA
9759 ACGCCTATAGCCTATGCAGCTTAAAAAAAAAGAGGCTTACAATGCCTATAGCCTATGAAGCTTAA
1 ACGCCTATAGCCTATGCAGCTTAAAAAAAAA-AGGCTTACAATGCCTATAGCCTATGAAGCTTAA
*
9824 AAAGAAAAAGGCTTACAATGCCTATAGCCAATGTAGCTTGAAAGAGGGCGTACA
65 AAAG-AAAAGGCTTACAATGCCTATAGCCAATGTAGCTTGAAAGAGGGCGCACA
*
9878 ACGCCTATAGCCTATGCAGCTTTAAAAAAAAA
1 ACGCCTATAGCCTATGCAGCTTAAAAAAAAAA
9910 CAAAAGGCTT
Statistics
Matches: 145, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
116 22 0.15
117 8 0.06
118 37 0.26
119 78 0.54
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.21
Consensus pattern (117 bp):
ACGCCTATAGCCTATGCAGCTTAAAAAAAAAAGGCTTACAATGCCTATAGCCTATGAAGCTTAAA
AAGAAAAGGCTTACAATGCCTATAGCCAATGTAGCTTGAAAGAGGGCGCACA
Found at i:9878 original size:78 final size:78
Alignment explanation
Indices: 9645--9909 Score: 290
Period size: 78 Copynumber: 3.4 Consensus size: 78
9635 CCTTGTTGAC
9645 GCCTATAGCCTATGCAGCTTAAAA-AAAAAGGCTTACAATGCCTATAGCCTATGTAGCTTAAAAA
1 GCCTATAGCCTATGCAGCTTAAAAGAAAAAGGCTTACAATGCCTATAGCCTATGTAGCTTAAAAA
*
9709 GAAAAGGCTTACAAT
66 G--AGGGCTTACAAT
* * * * ** * *
9724 GCCTATAGCCAATGTAGCTTGAAAG---AGGGCGCACAACGCCTATAGCCTATGCAGCTTAAAAA
1 GCCTATAGCCTATGCAGCTTAAAAGAAAAAGGCTTACAATGCCTATAGCCTATGTAGCTT--AAA
*
9786 AAAAGAGGCTTACAAT
64 AAGAG-GGCTTACAAT
* * *
9802 GCCTATAGCCTATGAAGCTTAAAAAGAAAAAGGCTTACAATGCCTATAGCCAATGTAGCTT-GAA
1 GCCTATAGCCTATGCAGCTT-AAAAGAAAAAGGCTTACAATGCCTATAGCCTATGTAGCTTAAAA
* *
9866 AGAGGGCGTACAAC
65 AGAGGGCTTACAAT
9880 GCCTATAGCCTATGCAGCTTTAAAA-AAAAA
1 GCCTATAGCCTATGCAGC-TTAAAAGAAAAA
9910 CAAAAGGCTT
Statistics
Matches: 153, Mismatches: 24, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
77 33 0.22
78 57 0.37
79 37 0.24
82 26 0.17
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.22
Consensus pattern (78 bp):
GCCTATAGCCTATGCAGCTTAAAAGAAAAAGGCTTACAATGCCTATAGCCTATGTAGCTTAAAAA
GAGGGCTTACAAT
Found at i:10551 original size:47 final size:45
Alignment explanation
Indices: 10499--10697 Score: 137
Period size: 46 Copynumber: 4.2 Consensus size: 45
10489 ATCACCTTCC
10499 TCCAACAATGAAAATTTATACGCTCTTTCCAACATGATGGTGGCGCT
1 TCCAACAAT-AAAATTTATACGCTC-TTCCAACATGATGGTGGCGCT
* * * *
10546 TCCAACAATAAAATTTATATGCGCTTCCAACACGGTGGGGTGGCGCT
1 TCCAACAATAAAATTTATACGCTCTTCCAACATGAT--GGTGGCGCT
* * ** * * * * *
10593 TCCAATAGACAAAACCTATACTCACTTCCAAAATGATGGTGACGCC
1 TCCAACA-ATAAAATTTATACGCTCTTCCAACATGATGGTGGCGCT
* * * *
10639 TCCAATCATAAAAAAAAAAGTTATACGCTCTTTTCAACATGATGGTGGCTCT
1 TCCAA-C-----AATAAAATTTATACGCTC-TTCCAACATGATGGTGGCGCT
10691 TCCAACA
1 TCCAACA
10698 TGATTGTGGC
Statistics
Matches: 115, Mismatches: 27, Indels: 21
0.71 0.17 0.13
Matches are distributed among these distances:
45 10 0.09
46 26 0.23
47 24 0.21
48 20 0.17
51 13 0.11
52 22 0.19
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (45 bp):
TCCAACAATAAAATTTATACGCTCTTCCAACATGATGGTGGCGCT
Found at i:10714 original size:20 final size:20
Alignment explanation
Indices: 10673--10715 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
10663 ACGCTCTTTT
* *
10673 CAACATGATGGTGGCTCTTC
1 CAACATGATGGTGGCGCCTC
*
10693 CAACATGATTGTGGCGCCTC
1 CAACATGATGGTGGCGCCTC
10713 CAA
1 CAA
10716 TCACAAAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (20 bp):
CAACATGATGGTGGCGCCTC
Found at i:10769 original size:45 final size:45
Alignment explanation
Indices: 10687--10789 Score: 118
Period size: 45 Copynumber: 2.3 Consensus size: 45
10677 ATGATGGTGG
** *
10687 CTCTTCCAACATGATTGTGGCGCCTCCAATCACAAAATTTATACA
1 CTCTTCCAACATGAGGGTGGCGCCTCCAAGCACAAAATTTATACA
* * **
10732 CTCTTCCAACATGAGGGTGGCGCTTCC-AGCGATAAAATTTATATG
1 CTCTTCCAACATGAGGGTGGCGCCTCCAAGC-ACAAAATTTATACA
*
10777 CGCTTCCAACATG
1 CTCTTCCAACATG
10790 GTTGCGCTTC
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 2 0.04
45 47 0.96
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (45 bp):
CTCTTCCAACATGAGGGTGGCGCCTCCAAGCACAAAATTTATACA
Found at i:10819 original size:20 final size:17
Alignment explanation
Indices: 10775--10861 Score: 102
Period size: 17 Copynumber: 4.8 Consensus size: 17
10765 AAAATTTATA
*
10775 TGCGCTTCCAACATGGT
1 TGCGCTTCCAACATGGC
10792 TGCGCTTCCAACATGATGC
1 TGCGCTTCCAACATG--GC
*
10811 TGACGCTTCCAACATGGT
1 TG-CGCTTCCAACATGGC
10829 TGCGCTTCCAACATGATGC
1 TGCGCTTCCAACATG--GC
10848 TGACGCTTCCAACA
1 TG-CGCTTCCAACA
10862 GAGAGAATTT
Statistics
Matches: 61, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
17 28 0.46
18 3 0.05
19 6 0.10
20 24 0.39
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (17 bp):
TGCGCTTCCAACATGGC
Found at i:10827 original size:37 final size:37
Alignment explanation
Indices: 10777--10861 Score: 170
Period size: 37 Copynumber: 2.3 Consensus size: 37
10767 AATTTATATG
10777 CGCTTCCAACATGGTTGCGCTTCCAACATGATGCTGA
1 CGCTTCCAACATGGTTGCGCTTCCAACATGATGCTGA
10814 CGCTTCCAACATGGTTGCGCTTCCAACATGATGCTGA
1 CGCTTCCAACATGGTTGCGCTTCCAACATGATGCTGA
10851 CGCTTCCAACA
1 CGCTTCCAACA
10862 GAGAGAATTT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.22, C:0.32, G:0.20, T:0.26
Consensus pattern (37 bp):
CGCTTCCAACATGGTTGCGCTTCCAACATGATGCTGA
Found at i:11066 original size:45 final size:44
Alignment explanation
Indices: 11007--11114 Score: 164
Period size: 45 Copynumber: 2.4 Consensus size: 44
10997 CCTCTTCCAG
11007 GTGGTGGCGCTTCCAATGACAA-AATTTATACCCACTTCCAACAT
1 GTGGTGGCGCTTCCAATGACAAGAA-TTATACCCACTTCCAACAT
* *
11051 AGTGGTGGCGCTTCCAATGACAAGAATTATACTCTCTTCCAACAT
1 -GTGGTGGCGCTTCCAATGACAAGAATTATACCCACTTCCAACAT
11096 GATGGTGGCGCTTCCAATG
1 G-TGGTGGCGCTTCCAATG
11115 GCATCTTCCA
Statistics
Matches: 59, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
44 1 0.02
45 56 0.95
46 2 0.03
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (44 bp):
GTGGTGGCGCTTCCAATGACAAGAATTATACCCACTTCCAACAT
Found at i:11135 original size:33 final size:33
Alignment explanation
Indices: 11085--11147 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
11075 AATTATACTC
11085 TCTTCCAACATGATGGTGGCGCTTCCAATGGCA
1 TCTTCCAACATGATGGTGGCGCTTCCAATGGCA
* *
11118 TCTTCCAATAT-AGTGGTGGTGCTTCCAATG
1 TCTTCCAACATGA-TGGTGGCGCTTCCAATG
11148 ACAAGAATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
32 1 0.04
33 26 0.96
ACGTcount: A:0.21, C:0.24, G:0.24, T:0.32
Consensus pattern (33 bp):
TCTTCCAACATGATGGTGGCGCTTCCAATGGCA
Found at i:11756 original size:46 final size:46
Alignment explanation
Indices: 11620--11762 Score: 189
Period size: 46 Copynumber: 3.1 Consensus size: 46
11610 AGGAGATGCA
**
11620 TCTTATGTGAGCACCCTTCTTCAGAAAG-ATTACTCTATACAATAGC
1 TCTTATGTGAGCACCCTTCTTCAGAAAGAATT-CTCTATACGGTAGC
* * * *
11666 TCTTATGTGAGCACACTTCTTCAGAAAGAATACTCTACATGGTAGC
1 TCTTATGTGAGCACCCTTCTTCAGAAAGAATTCTCTATACGGTAGC
* *
11712 TCTTATGTGAGCACCCATCTCCAGAAAGAATTCTCTATACGGTAGCC
1 TCTTATGTGAGCACCCTTCTTCAGAAAGAATTCTCTATACGGTAG-C
11759 TCTT
1 TCTT
11763 GCAACACATT
Statistics
Matches: 83, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
46 76 0.92
47 7 0.08
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.31
Consensus pattern (46 bp):
TCTTATGTGAGCACCCTTCTTCAGAAAGAATTCTCTATACGGTAGC
Done.