Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014018.1 Corchorus capsularis cultivar CVL-1 contig14039, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56737

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
84--184
22
4.8
22
70
18
79
38
9
7
43
1.67
82--238
62
2.5
62
90
2
235
36
11
8
43
1.72
450--556
23
4.7
23
83
5
121
36
15
9
38
1.80
433--556
45
2.8
45
81
6
135
37
15
8
37
1.79
208--556
22
15.7
22
72
13
148
36
15
10
37
1.82
561--635
22
3.4
22
70
14
64
30
10
10
48
1.72
902--978
31
2.5
31
87
6
102
49
5
14
31
1.65
6743--6790
25
1.9
25
86
0
69
52
4
6
37
1.46
7755--7812
25
2.3
24
82
11
73
44
1
3
50
1.29
9473--9679
54
3.9
54
82
11
273
32
26
9
32
1.88
9482--9679
105
1.9
102
89
3
306
33
25
9
31
1.87
9776--10279
201
2.6
191
83
11
616
32
20
20
26
1.97
15883--15933
13
4.2
13
78
14
54
21
23
1
52
1.57
17648--18034
157
2.5
156
76
8
383
34
18
15
31
1.92
19485--19509
7
3.6
7
100
0
50
24
0
12
64
1.27
19645--19680
18
1.9
19
88
5
56
5
13
8
72
1.27
21208--21237
9
3.2
9
95
4
51
3
10
0
86
0.67
23290--23340
13
4.2
13
82
14
72
23
21
0
54
1.44
24910--24941
16
1.9
17
93
6
57
43
6
6
43
1.54
27466--27535
28
2.5
28
86
4
88
52
21
10
15
1.71
31522--31548
6
4.5
6
100
0
54
55
14
0
29
1.40
31545--31579
13
2.7
13
90
0
52
62
8
8
20
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32486--32510
10
2.5
10
100
0
50
24
8
20
48
1.76
33103--33144
10
3.9
11
78
15
52
64
2
7
26
1.32
38727--38761
13
2.7
13
95
0
61
60
8
11
20
1.57
39634--39658
10
2.5
10
100
0
50
24
8
20
48
1.76
50945--51191
123
2.0
123
88
1
370
38
9
20
31
1.85

Tables:   1

The End!