Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014019.1 Corchorus capsularis cultivar CVL-1 contig14040, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32526

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
294--334
21
2.0
21
85
0
55
31
9
29
29
1.89
3013--3078
31
2.1
31
88
5
98
28
19
4
46
1.69
3594--3755
22
7.3
22
78
8
139
33
9
18
38
1.84
3791--3882
22
4.2
22
81
5
87
35
5
19
39
1.75
4061--4332
22
12.5
22
71
13
118
42
10
14
33
1.79
4413--4463
19
2.6
20
87
6
77
45
11
15
27
1.81
4413--4723
44
7.3
44
73
11
175
40
9
15
33
1.81
4451--4734
22
13.1
22
72
11
113
39
9
15
35
1.80
4666--4743
22
3.5
23
81
11
74
35
12
14
37
1.84
4765--4827
22
2.8
22
78
2
54
31
14
17
36
1.90
4743--4827
44
1.9
45
80
7
102
30
11
17
40
1.86
4772--4827
22
2.5
22
82
2
67
30
12
19
37
1.89
7031--7071
21
2.0
21
85
0
55
31
9
29
29
1.89
8184--8217
4
8.5
4
100
0
68
23
0
0
76
0.79
8232--8265
17
2.1
16
88
5
50
38
29
2
29
1.72
9293--9433
56
2.5
57
87
8
202
46
24
13
16
1.83
10900--10945
21
2.1
22
88
4
67
41
17
13
28
1.86
15186--15236
21
2.4
22
87
9
70
49
13
9
27
1.74
18057--18096
13
3.2
13
85
7
55
17
0
15
67
1.23
25898--25945
25
1.9
25
100
0
96
62
12
16
8
1.53
26535--26612
39
2.0
39
90
5
122
29
19
35
15
1.92
29721--29883
87
1.9
86
83
7
213
33
7
20
38
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30655--30715
29
2.1
29
81
3
68
31
14
21
32
1.93

Tables:   1

The End!