Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014020.1 Corchorus capsularis cultivar CVL-1 contig14041, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96911

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3554--3594
13
3.2
13
92
0
73
21
4
17
56
1.60
9060--9112
16
3.2
16
86
5
70
5
35
1
56
1.34
9075--9200
64
2.0
64
93
0
216
17
33
2
46
1.61
9139--9185
15
2.9
16
87
6
60
6
31
2
59
1.34
9710--9780
26
3.0
24
84
10
92
50
16
14
18
1.78
10051--10103
15
3.5
15
77
10
63
5
39
1
52
1.36
16949--16998
3
16.7
3
100
0
100
32
0
0
68
0.90
17355--17383
2
14.5
2
100
0
58
48
0
0
51
1.00
20526--20943
209
2.0
209
94
0
730
24
13
16
44
1.84
24481--24531
22
2.4
22
80
12
61
9
13
11
64
1.49
25383--25494
58
1.9
58
85
7
156
32
15
7
45
1.73
27603--27687
33
2.6
33
88
0
125
44
22
4
28
1.73
27603--27699
33
2.9
34
83
8
121
41
22
6
29
1.78
28738--28770
2
16.5
2
100
0
66
51
0
0
48
1.00
30885--30930
2
23.0
2
95
0
83
50
2
0
47
1.13
31574--31615
22
1.9
22
85
0
57
21
11
14
52
1.73
34348--34379
3
11.0
3
93
6
57
65
0
0
34
0.93
42038--42085
16
3.0
16
75
0
51
10
6
18
64
1.45
46140--46178
14
2.9
14
96
3
71
0
20
0
79
0.73
47844--47899
29
1.9
29
100
0
112
48
10
3
37
1.56
48326--48459
45
3.1
45
89
10
226
22
13
11
52
1.73
48334--48461
39
3.1
39
93
6
202
21
14
10
53
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51538--51567
2
15.0
2
100
0
60
50
0
0
50
1.00
55771--55803
17
1.9
17
100
0
66
27
6
36
30
1.81
58714--58764
2
25.5
2
100
0
102
49
0
0
50
1.00
64979--65017
2
19.5
2
100
0
78
48
0
0
51
1.00
65708--65752
20
2.3
20
88
7
67
53
13
17
15
1.73
73655--73680
10
2.6
10
100
0
52
38
23
7
30
1.83
79552--79583
14
2.3
14
94
0
55
50
15
18
15
1.79
80355--80494
60
2.3
60
91
4
221
38
17
17
27
1.91
80392--80495
31
3.4
30
75
15
115
38
18
17
25
1.92
80364--80463
29
3.4
28
74
17
96
36
17
18
29
1.93
80538--80694
60
2.7
59
85
4
203
29
17
17
35
1.93
81680--81766
45
1.9
45
86
9
124
39
14
17
28
1.89
88177--88235
27
2.2
28
84
9
86
16
15
18
49
1.80
89572--89667
35
2.7
35
91
0
156
40
10
13
35
1.79

Tables:   1

The End!