Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014021.1 Corchorus capsularis cultivar CVL-1 contig14042, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64511

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78--135
25
2.4
23
88
5
80
32
24
1
41
1.65
145--212
26
2.6
26
90
0
109
54
10
1
33
1.43
145--225
13
6.1
15
69
28
51
55
9
1
33
1.41
145--262
52
2.4
51
79
13
122
55
10
0
33
1.40
264--298
9
3.9
9
92
0
61
74
0
0
25
0.82
763--807
21
2.1
21
83
0
54
15
37
6
40
1.74
1088--1155
26
2.6
26
86
9
102
33
1
10
54
1.43
1058--1149
11
7.1
13
69
22
59
34
2
7
55
1.40
1165--1223
25
2.4
25
91
5
95
40
0
23
35
1.55
10828--10854
8
3.4
8
100
0
54
0
11
0
88
0.50
14457--14484
5
5.6
5
100
0
56
64
0
17
17
1.30
16447--16531
30
2.8
30
96
0
161
28
27
16
28
1.97
23249--23390
69
2.1
69
100
0
284
26
23
19
30
1.98
24757--24798
5
8.2
5
84
10
50
0
21
0
78
0.75
39701--39735
12
2.9
12
86
0
52
25
0
42
31
1.55
40310--40881
22
26.5
21
69
14
231
34
16
10
38
1.83
40382--40425
23
2.0
22
81
4
52
25
18
13
43
1.86
40612--40696
23
3.7
23
77
1
82
36
15
7
41
1.74
40310--41135
44
19.3
44
67
15
270
35
16
9
38
1.82
40831--40881
19
2.6
20
90
6
86
25
17
11
45
1.83
40987--41236
22
11.3
22
70
10
127
34
15
9
41
1.79
40987--41297
22
13.8
22
69
17
76
35
15
9
40
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41260--41308
22
2.2
23
85
3
64
44
20
4
30
1.70
41408--41547
22
6.3
22
74
12
72
39
20
9
31
1.84
41460--41546
22
4.0
21
77
7
93
35
18
10
35
1.85
41713--41749
19
1.9
19
89
10
58
67
2
0
29
1.04
42127--42204
30
2.6
31
84
10
99
48
5
15
30
1.66
42139--42204
31
2.2
31
86
8
91
51
6
15
27
1.66
46746--46798
17
3.1
17
86
0
70
20
20
22
35
1.96
47230--47285
29
2.0
28
89
10
87
44
19
10
25
1.83
48063--48098
3
12.0
3
100
0
72
33
0
0
66
0.92
54819--54866
23
2.1
23
100
0
96
54
12
20
12
1.70
60467--60513
21
2.1
23
88
7
71
55
6
6
31
1.51
60474--60551
23
3.6
23
70
16
58
52
6
6
34
1.53
62047--62071
3
8.3
3
100
0
50
36
0
64
0
0.94

Tables:   1

The End!