Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014026.1 Corchorus capsularis cultivar CVL-1 contig14047, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3077
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.37


Found at i:1513 original size:10 final size:10

Alignment explanation


    Indices: 1498--1522  Score: 50
    Period size: 10  Copynumber: 2.5  Consensus size: 10

       1488 GTTGCTAAAT

                      
       1498 AATTCCAGAA
          1 AATTCCAGAA

                      
       1508 AATTCCAGAA
          1 AATTCCAGAA

                 
       1518 AATTC
          1 AATTC

       1523 TGGAGTCCTC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   15  1.00

ACGTcount: A:0.48, C:0.20, G:0.08, T:0.24


Consensus pattern (10 bp):   
AATTCCAGAA
Done.