Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014030.1 Corchorus capsularis cultivar CVL-1 contig14051, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8128
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30


Found at i:7120 original size:21 final size:23

Alignment explanation


    Indices: 7088--7132  Score: 76
    Period size: 22  Copynumber: 2.0  Consensus size: 23

       7078 AGTTATTCAG

                                   
       7088 TTTATGTTTATG-CTTTATTTTT
          1 TTTATGTTTATGTCTTTATTTTT

                                   
       7110 TTTAT-TTTATGTCTTTATTTTT
          1 TTTATGTTTATGTCTTTATTTTT

             
       7132 T
          1 T

       7133 AAGTTTCATT


Statistics
Matches: 22,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  21    6  0.27
  22   16  0.73

ACGTcount: A:0.13, C:0.04, G:0.07, T:0.76


Consensus pattern (23 bp):   
TTTATGTTTATGTCTTTATTTTT
Done.