Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014031.1 Corchorus capsularis cultivar CVL-1 contig14052, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24480

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6838--6881
6
7.5
6
82
5
54
4
27
0
68
1.09
6836--6878
17
2.5
17
78
14
52
4
25
0
69
1.07
8676--8792
27
4.3
26
93
4
164
17
42
17
22
1.89
8676--8792
54
2.2
53
90
6
182
17
42
17
22
1.89
9601--9635
17
2.1
17
88
0
52
20
14
20
45
1.85
11170--11250
32
2.5
33
84
8
112
34
22
20
22
1.97
11326--11395
24
2.9
24
81
6
79
15
31
28
24
1.96
12177--12215
17
2.3
17
86
0
51
25
28
15
30
1.96
13005--13092
45
2.0
45
93
4
151
36
20
18
25
1.95
14070--14416
166
2.1
167
86
1
482
29
15
16
38
1.89
18193--18238
19
2.4
19
85
7
58
67
0
0
32
0.91
18193--18242
25
2.0
24
85
14
66
66
0
0
34
0.92
18328--18363
19
1.9
20
88
11
58
69
0
0
30
0.89
18450--18476
11
2.5
11
100
0
54
25
55
0
18
1.43
21022--21052
14
2.2
14
100
0
62
29
35
16
19
1.93
22360--22443
6
12.4
7
81
14
81
3
26
0
70
1.04
22389--22479
6
15.2
6
81
4
67
2
25
0
72
0.96
22385--22444
19
3.2
19
88
4
86
0
28
0
71
0.86
22391--22446
25
2.3
24
84
3
76
0
26
0
73
0.84

Tables:   1

The End!