genome.fa.s14033.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014033.1 Corchorus capsularis cultivar CVL-1 contig14054, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  166900

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12--112	33	3.0	34	80	11	102	9	32	41	15	1.81
4695--5141	178	2.5	177	80	4	499	34	14	14	35	1.88
8033--8093	23	2.5	23	81	7	68	11	6	8	73	1.24
9278--9305	8	3.5	8	100	0	56	14	0	35	50	1.43
11120--11155	2	18.0	2	100	0	72	50	0	0	50	1.00
16706--16938	109	2.1	109	91	0	376	44	12	9	33	1.74
24999--25049	24	2.1	24	96	0	93	43	11	9	35	1.75
25089--25186	48	2.0	48	92	0	160	50	13	10	26	1.73
25597--25648	26	2.0	27	84	3	70	46	3	9	40	1.55
25638--25708	27	2.5	29	88	6	110	49	5	14	30	1.66
25858--25896	2	20.0	2	86	5	53	53	0	2	43	1.14
27183--27343	60	2.7	59	86	3	216	27	19	15	37	1.92
30451--30484	2	17.0	2	100	0	68	50	0	0	50	1.00
31151--31221	19	3.8	19	77	15	76	2	23	1	71	1.07
31824--31883	30	2.0	30	96	0	111	33	20	11	35	1.88
34756--34797	21	2.0	21	95	0	75	21	28	11	38	1.89
42529--42559	15	2.1	15	100	0	62	25	12	12	48	1.77
54745--54990	129	1.9	129	91	0	402	26	21	21	30	1.98
59761--59800	19	2.1	19	90	9	64	55	0	0	45	0.99
69769--69835	32	2.1	32	94	0	116	34	4	34	26	1.77
72490--72529	2	20.0	2	89	0	62	50	5	0	45	1.23
72632--72672	21	2.0	21	85	0	55	39	0	7	53	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76117--76144	1	28.0	1	100	0	56	0	0	0	100	0.00
84227--84447	110	2.0	110	100	0	442	34	13	14	37	1.85
85560--85613	23	2.3	23	81	6	74	37	14	20	27	1.92
90947--90975	15	1.9	15	100	0	58	58	0	34	6	1.25
105341--105394	27	2.0	27	92	0	90	31	18	7	42	1.78
108100--108165	30	2.2	29	86	5	87	72	3	0	24	0.98
108235--108337	31	3.4	31	71	11	88	33	14	22	29	1.94
108540--108568	3	9.7	3	100	0	58	68	0	0	31	0.89
108802--108854	21	2.5	21	96	0	97	7	16	13	62	1.53
109117--109151	11	3.2	11	83	0	52	77	17	5	0	0.96
121359--121384	4	6.5	4	100	0	52	23	0	0	76	0.78
122628--122661	17	1.9	18	88	5	52	23	17	8	50	1.74
128170--128530	185	2.0	176	95	4	641	34	17	17	30	1.93
128515--128552	19	2.0	19	100	0	76	47	5	31	15	1.68
128572--128717	41	3.7	41	76	20	175	35	25	10	28	1.90
130426--130451	8	3.2	8	100	0	52	11	0	42	46	1.40
137202--137304	50	2.0	51	94	3	181	43	21	8	26	1.81
139203--139242	17	2.4	17	91	4	64	50	12	5	32	1.62
141433--141482	25	2.0	24	85	11	66	54	2	6	38	1.37
147241--147283	22	2.0	22	95	0	77	51	2	18	27	1.59
148015--148076	29	2.1	29	91	5	99	58	1	3	37	1.24
148335--148368	15	2.3	15	89	0	50	17	23	38	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155624--155697	31	2.4	31	88	6	105	28	16	5	50	1.67
160077--160170	31	3.0	31	89	6	145	34	26	14	24	1.94
160375--160414	21	1.9	21	89	0	62	15	40	10	35	1.80
160701--160768	26	2.6	26	86	9	102	33	1	10	54	1.43
160671--160762	13	7.1	13	67	24	52	32	1	8	57	1.36
160778--160836	25	2.4	25	91	5	95	40	0	23	35	1.55
162254--162325	29	2.4	30	86	6	92	59	9	13	16	1.60
165984--166017	6	5.8	6	86	6	52	82	0	14	2	0.79
165973--166023	23	2.3	22	86	6	75	80	0	13	5	0.89
165985--166024	17	2.4	17	91	0	62	82	0	12	5	0.82

Tables:   1

The End!