Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014034.1 Corchorus capsularis cultivar CVL-1 contig14055, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40791

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
187--225
12
3.3
12
89
7
53
10
2
2
84
0.81
187--237
12
4.5
11
83
11
50
7
7
1
82
0.92
5877--6072
75
2.6
76
86
3
258
19
23
12
44
1.85
5845--6072
75
3.1
75
82
2
255
18
24
14
42
1.87
6046--6174
41
3.4
40
63
21
105
23
28
6
41
1.80
6042--6193
72
2.1
72
93
0
259
22
27
8
41
1.83
30377--30444
31
2.2
32
81
7
77
48
4
14
32
1.64
31244--31469
115
2.0
114
86
6
314
43
11
11
34
1.75
33606--33951
177
1.9
179
87
4
502
26
25
16
31
1.97
35524--35560
1
37.0
1
100
0
74
0
0
0
100
0.00

Tables:   1

The End!